New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4896398	33 (0.670)	8 (0.190)	5/214	NT	19.6%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896445	38 (0.920)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein

CCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4896240‑4896398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcctcttcgcgggtaaaCCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTCTTCTTG  <  NC_002947/4896445‑4896298                                                                                                                                                                                                                                                                                                                     CCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTT                                                                                                                                                                >  6:286765/1‑149      CTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGG                                                                                                                                                           <  3:291495/149‑1         GCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGT                                                                                                                                                         <  2:54983/148‑1         GCCAATCGCATGCGTGGTGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGG                                                                                                                                                          <  8:130987/147‑1                                       CATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCCCTGTGGCAATGGGAAGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTC                                                                                                                                                               >  6:58206/1‑112                                       CATGATTGCCCGACCGGCCACAAGATGACCCACGAGCAGGGGGCGGCGTTCTGTGCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTC                                                                                                                                                               <  5:58206/112‑1                                             TGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGC                                                                                                                    >  8:66662/1‑149                                                        CCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGC                                                                                                          <  7:66662/148‑1                                                        CCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGC                                                                                                          <  2:77424/148‑1                                                        CCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGC                                                                                                          <  4:145115/148‑1                                                                    CCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGA                                                                                                       >  8:108295/1‑139                                                                    CCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGA                                                                                                       <  7:108295/139‑1                                                                     CACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGC                                                                                                          <  5:153695/135‑1                                                                     CACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGC                                                                                                          >  6:153695/1‑135                                                                                                                                            CCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCC                     >  5:286765/1‑149                                                                                                                                            CCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCC                     >  6:148801/1‑149                                                                                                                                            CCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCC                     >  6:267093/1‑149                                                                                                                                                 CTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTATGAGCGGATTTACCCGCGAAGTGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCT                <  6:63179/149‑1                                                                                                                                                 CTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTG                                                              >  6:92650/1‑103                                                                                                                                                 CTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTG                                                              <  5:92650/103‑1                                                                                                                                                       GCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGG          >  7:283691/1‑149                                                                                                                                                         GGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTC        >  7:83832/1‑149                                                                                                                                                              AACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTCTTCTT   <  2:209178/149‑1                                                                                                                                                               ACCCGCTCCTCCGGGGCACCGCGCACGGCCCGCGCCTGTAGGAGCGTATTTACCCGCTAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTCTTCTTG  <  3:155752/149‑1                                                                                                                                                               ACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTCTTCTTG  <  5:267093/149‑1                                                                                                                                                                                                                                                                                                                     CCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4896240‑4896398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcctcttcgcgggtaaaCCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCGCTATCACGCTTTGGGAAACAACCCATTCCCACAGCGAGAACAGAACGCCGCCCCCTGCTCGTGGGTCTTCTTG  <  NC_002947/4896445‑4896298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.