New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4950087 =	43 (0.870)	3 (0.060)	3/244	NT	7.2%	coding (257/969 nt)	fliM	flagellar biosynthesis switching/energizing protein
	?	NC_002947	4950133 =	36 (0.770)					coding (211/969 nt)	fliM	flagellar biosynthesis switching/energizing protein

TCAAAAGCTACGACCTGACCAGTCAGGACCGTATCGTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4950240‑4950087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtTGAACATGCTGATACGGGTATAGCGGGCGAAGCGCTCGTTGATCATTTCCAGGGTCGGCATGCGACCCCGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTT  >  NC_002947/4950133‑4950236                                                                                                                                                                                                                                                                     TCAAAAGCTACGACCTGACCAGTCAGGACCGTATCGTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTG                                                                                                               >  4:153244/1‑149       GCTACGACCTGACCAGTCAGGACCGTATCGTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGT                                                                                                          >  7:235729/1‑148                                    GTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGC                                                                                                              >  5:234324/1‑115                                    GTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGC                                                                                                              <  6:234324/115‑1                                        aGGGTCGGCATG‑CGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTG                                                                                                               >  1:10985/2‑110                                        aGGGTCGGCATG‑CGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTG                                                                                                               <  2:10985/109‑1                                                                                                               CCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGTTGAACATGCTGATACGGGTATAGCGGGCGAAGCGCTCGTTGATCATTTCCAGGGTCGGCATGCGACCCCGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTT  >  5:76139/1‑149                                                                                                                CTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGTTGAACATGCTGATACGGGTATAGCGGGCGAAGCGCTCGTTGATCATTTCCAGGGTCGGCATGCGACCCCGCACGATACG                           >  3:94901/1‑123                                                                                                                CTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGTTGAACATGCTGATACGGGTATAGCGGGCGAAGCGCTCGTTGATCATTTCCAGGGTCGGCATGCGACCCCGCACGATACG                           <  4:94901/123‑1                                                                                                                                                                                                                                                                     TCAAAAGCTACGACCTGACCAGTCAGGACCGTATCGTGCGGGGTC‑GCATGCCGACCCTGGAAATGATCAACGAGCGCTTCGCCCGCTATACCCGTATCAGCATGTTCAACCTGCTGCGCCGCTCCGCTGACGTGGCCGTGGGTGGCGTGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4950240‑4950087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtTGAACATGCTGATACGGGTATAGCGGGCGAAGCGCTCGTTGATCATTTCCAGGGTCGGCATGCGACCCCGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTT  >  NC_002947/4950133‑4950236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.