New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5198801	51 (1.030)	4 (0.090)	4/244	NT	7.6%	coding (88/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5198838	49 (1.040)					coding (125/912 nt)	PP_4579	LysR family transcriptional regulator

CAGAGGCCGCCTCGCCTGCGTCCAACGAAAAAAACCGCCGGTCTGGATTAAGAAAAACTGATCATGAACCTTCGCTTCCTCGAAACCTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5198651‑5198801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccaggTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCATGATCAGTTTTTCTTAATC  <  NC_002947/5198838‑5198696                                                                                                                                                                                                                                                                                                        CAGAGGCCGCCTCGCCTGCGTCCAACGAAAAAAACCGCCGGTCTGGATTAAGAAAAACTGATCATGAACCTTCGCTTCCTCGAAACCTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACa                                                                                                                                                     >  3:91648/1‑146                        AACGAAAAAAACCGCCGGTCTGGATTAAGAAAAACTGATCATGAACCTTCGCTTCCTCGAAACCTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGGTCGGCCTCCAGTGCGGCAATG                                                                                                                            >  3:115902/1‑149                                                TTAAGAAAAACTGATCATGAACCTTCGCTTCCTCGAAACCTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGGTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTG                                                                                                    <  4:115902/149‑1                                                                                       CTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGGTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGG                                                                                                      >  3:250033/1‑108                                                                                       CTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGGTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGG                                                                                                      <  4:250033/108‑1                                                                                                                                                   CCAGGTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCATGATCAGTTTTTCTTAATC  >  1:117978/1‑148                                                                                                                                                   CCAGGTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCATGATCAGTTTTTCTTAATC  >  4:273295/1‑148                                                                                                                                                       GTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCA                     >  5:26861/1‑125                                                                                                                                                       GTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCA                     <  6:26861/125‑1                                                                                                                                                                                                                                                                                                        CAGAGGCCGCCTCGCCTGCGTCCAACGAAAAAAACCGCCGGTCTGGATTAAGAAAAACTGATCATGAACCTTCGCTTCCTCGAAACCTTCGTCTGGGTCGCCCGGCTCAAGAGCTTCCGCCTGACGGCAGAAAAGCTGTTCACCACCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5198651‑5198801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccaggTCGGCCTCCAGTGCGGCAATGCGGCTGGATACCGAAGCCTGGGTGGTGAACAGCTTTTCTGCCGTCAGGCGGAAGCTCTTGAGCCGGGCGACCCAGACGAAGGTTTCGAGGAAGCGAAGGTTCATGATCAGTTTTTCTTAATC  <  NC_002947/5198838‑5198696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.