New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5403984	44 (0.890)	4 (0.080)	4/246	NT	7.7%	intergenic (‑282/+435)	PP_4746/PP_4748	transposase/amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5404032	54 (1.140)					intergenic (‑330/+387)	PP_4746/PP_4748	transposase/amino acid ABC transporter substrate‑binding protein

GGTGAACGCCAACGCGACCAGCCCCTCGCGCGCCAGGCGACGGGTGTAATAGCCCAACTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5403832‑5403984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGGGGTTCGATCGCGCCTTCCCAGCGCTGTGCAGCAATGCGCATCAACTGGGTATCGCCCTGTTTGCGCAGTTCAACGCGTTCACCTGCGGCGAGTT  <  NC_002947/5404032‑5403887                                                                                                                                                                                                                                                                                                             GGTGAACGCCAACGCGACCAGCCCCTCGCGCGCCAGGCGACGGGTGTAATAGCCCAACTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACC                                                                                                                                                        >  2:287781/1‑149      ACGCCAACGCGACCAGCCCCTCGCGCGCCAGGCGACGGGTGTAATAGCCCAACTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAG                                                                                                                                                    <  5:145021/148‑1                                                AATAGCCCAACTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCG                                                                                                         >  7:26357/1‑149                                                          CTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGGG                                                                                               <  8:26357/149‑1                                                                                     CGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGG                                                                                                >  5:38161/1‑121                                                                                     CGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGG                                                                                                <  6:38161/121‑1                                                                                                                                                      CCAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGGGGTTCGATCGCGCCTTCCCAGCGCTGTGCAGCAATGCGCATCAACTGGGTATCGCCCTGTTTGCGCAGTTCAACGCGTTCACCTGCGGCGAGT   <  3:85801/149‑1                                                                                                                                                       CAGTTCGCTCCGGCCATGATCCGCTGCGACTCGGCCCGATGCATCGCGCAACTGGGGTTCGATCTCGCCTTCCCAGCGCTGTGCAGCAATGCGCATCAACTGGGTATCGCCCTGTTTGCGCAGTTCAACGCGTTCACCTGCGGCTAGTT  <  7:113007/149‑1                                                                                                                                                       CAGGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGGGGTTCGATCGCGCCTTCCCAGCGCTGTGCAGCAATGCGCATCAACTGGGTATCGCCCTGTTTGCGCAGTTCAACGCGTTCACCTGCGGCGAGTT  <  6:9031/149‑1                                                                                                                                                                                                                                                                                                             GGTGAACGCCAACGCGACCAGCCCCTCGCGCGCCAGGCGACGGGTGTAATAGCCCAACTCGCCGCAGGTGAACGCGTTGAACTGCGCAAACAGGGCGATACCCAGTTGATGCGCATTGCTGCACAGCGCTGGGAAGGCGCGATCGAACCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5403832‑5403984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagGTCGCGCCGGCCATGATCCGCTGCGACGCGGCCCGAGGCATCGCGCAACTGGGGTTCGATCGCGCCTTCCCAGCGCTGTGCAGCAATGCGCATCAACTGGGTATCGCCCTGTTTGCGCAGTTCAACGCGTTCACCTGCGGCGAGTT  <  NC_002947/5404032‑5403887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.