New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5450868 =	59 (1.200)	4 (0.090)	4/242	NT	6.5%	coding (247/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
	?	NC_002947	5450909 =	59 (1.260)					coding (288/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein

CAGGTCCTTGATGTTGAAGCTGTCGCCGTTCTCCTTGAGGATCAACGGCAGCAAGTCTTTGGCGAGCAGGATCCCGAGCACATCGTCATGGCTTTCGCCGATTACCGGGTAGCGCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5451020‑5450868 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcgcgCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGTCC  >  NC_002947/5450909‑5451050                                                                                                                                                                                                                                                                                                         CAGGTCCTTGATGTTGAAGCTGTCGCCGTTCTCCTTGAGGATCAACGGCAGCAAGTCTTTGGCGAGCAGGATCCCGAGCACATCGTCATGGCTTTCGCCGATTACCGGGTAGCGCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACT                                                                                                                                                    >  4:111122/1‑149    GTCCTTGATGTTGAAGCTGTCGCCGTTCTCCTTGAGGATCAACGGCAGCAAGTCTTTGGCGAGCAGGATCCCGAGCACATCGTCATGGCTTTCGCCGATTACCGGGTAGCGCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACTCGC                                                                                                                                                 <  3:111122/149‑1                                                                                                                  GCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTC                                                                    <  3:19176/116‑1                                                                                                                  GCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTC                                                                    >  4:19176/1‑116                                                                                                                         CGCGGCGTCGATCACCGCCGGCAGGAACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGA                                                      <  7:207473/123‑1                                                                                                                         CGCGGCGTCGATCACCGCCGGCAGGAACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGA                                                      >  8:207473/1‑123                                                                                                                                                   ACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGTCC  <  2:3560/149‑1                                                                                                                                                     TCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGTCC  >  1:304058/1‑147                                                                                                                                                                                                                                                                                                         CAGGTCCTTGATGTTGAAGCTGTCGCCGTTCTCCTTGAGGATCAACGGCAGCAAGTCTTTGGCGAGCAGGATCCCGAGCACATCGTCATGGCTTTCGCCGATTACCGGGTAGCGCGAGTGCGCGGCGTCGATCACCGCCGGCAGGAACTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5451020‑5450868 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcgcgCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGTCC  >  NC_002947/5450909‑5451050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.