New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5567397	46 (0.930)	5 (0.110)	4/244	NT	8.9%	coding (89/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	= 5567439	58 (1.230)					coding (47/1899 nt)	mutL	DNA mismatch repair protein MutL

TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5567245‑5567397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGG  <  NC_002947/5567439‑5567295                                                                                                                                                                                                                                                                                                            TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTG                                                                                                                                                       <  8:27783/149‑1   GCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGG                                                                                                                                                      <  3:100016/148‑1       GTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA                                                                                                                                                   >  7:133872/1‑147        TCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA                                                                                                                                                   >  1:44818/1‑146          GAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAAC                                                                                                                                                 >  4:195646/1‑146                      GCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTG                                                                                                                                                       <  3:258825/128‑1                      GCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTG                                                                                                                                                       >  4:258825/1‑128                                                       CATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAG                                                                                                 <  3:195646/149‑1                                                                                     CCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAA                                                                                              >  8:5948/1‑122                                                                                     CCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAA                                                                                              <  7:5948/122‑1                                                                                        GCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAG                                                                                                 <  2:36162/116‑1                                                                                        GCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAG                                                                                                 >  1:36162/1‑116                                                                                                                                                      GCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGG  >  6:174220/1‑149                                                                                                                                                      GCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGG          >  7:265447/1‑141                                                                                                                                                      GCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGG          <  8:265447/141‑1                                                                                                                                                         AACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCG           <  7:100359/137‑1                                                                                                                                                         AACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCG           >  8:100359/1‑137                                                                                                                                                                                                                                                                                                            TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5567245‑5567397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGG  <  NC_002947/5567439‑5567295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.