New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5826216	69 (1.400)	4 (0.090)	4/244	NT	6.0%	coding (79/813 nt)	thiG	thiazole synthase
	?	NC_002947	= 5826245	59 (1.250)					coding (50/813 nt)	thiG	thiazole synthase

GGCAGGATGGTGTACTTGTCGGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5826065‑5826216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacttTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCGTGACATGGAAGAAACCCGCCTGGCCACCGAGGCCTCGGGTGCCGAAATCGTCACCGTCGCTGTGCGCCGCACCAACCTTGGCCAGAACGCGGGCGAGCCGAACCTGCTCGA  <  NC_002947/5826245‑5826098                                                                                                                                                                                                                                                                                                              GGCAGGATGGTGTACTTGTCGGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGT                                                                                                                                                          <  4:24587/148‑1   CAGGATGGTGTACTTGTCGGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACT                                                                                                                                                       >  2:128344/1‑149                     GGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTT                                                                                                                                                      <  1:121522/132‑1                     GGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTT                                                                                                                                                      >  2:121522/1‑132                                CATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTTTCCAGTCGCGCCTGCTGGTCGGTACCGG                                                                                                                          >  2:193161/1‑149                                        cgggTCGGCTCGCCCGCGTTCTGGACACGGTGGGTGCGGCGCACAGCGACGGTGCCGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTTTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACC                                                                                                                  <  8:258584/145‑1                                         GGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTTTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCG                                                                                                                 <  5:153623/149‑1                                          GTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTTTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCGT                                                                                                                <  1:193161/149‑1                                                                                                                                                      CTTTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCGTGACATGGAAGAAACCCGCCTGGCCACCGAGGCCTCGGGTGCCGAAATCGTCACCGTCGCTGTGCGCCGCACCAACCTTGGCCAGAACGCGGGCGAGCCGAACCTGCTC    >  3:171887/1‑149                                                                                                                                                        TTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCGTGACATGGAAGAAACCCGCCTGGCCACCGAGGCCTCGGGTGCCGAAATCGTCACCGTCGCTGTGCGCCGCACCAACCTTGGCCAGAACGCGGGCGAGCCGAACCTGCTCGA  >  1:128344/1‑149                                                                                                                                                                                                                                                                                                              GGCAGGATGGTGTACTTGTCGGGCGACAGTACATCGAGCAGGTTCGGCTCGCCCGCGTTCTGGCCAAGGTTGGTGCGGCGCACAGCGACGGTGACGATTTCGGCACCCGAGGCCTCGGTGGCCAGGCGGGTTTCTTCCATGTCACGGTACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5826065‑5826216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacttTCCAGTCGCGCCTGCTGGTCGGTACCGGCAAGTACCGTGACATGGAAGAAACCCGCCTGGCCACCGAGGCCTCGGGTGCCGAAATCGTCACCGTCGCTGTGCGCCGCACCAACCTTGGCCAGAACGCGGGCGAGCCGAACCTGCTCGA  <  NC_002947/5826245‑5826098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.