New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5999327	59 (1.200)	3 (0.070)	3/226	NT	5.6%	intergenic (‑182/‑139)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein
	?	NC_002947	= 5999357	50 (1.150)					intergenic (‑212/‑109)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein

TTGATGTTCAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5999166‑5999327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgttcccacaggTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTGGTTTTA  <  NC_002947/5999357‑5999210                                                                                                                                                                                                                                                                                                                        TTGATGTTCAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGC                                                                                                                                                                   >  6:174789/1‑149   GATGTTCAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCC                                                                                                                                                                 >  5:177721/1‑149    ATGTTCAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCC                                                                                                                                                                 <  6:48873/148‑1         CAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCC                                                                                                                                                            >  1:271711/1‑148              AGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAG                                                                                                                                                       <  3:241864/148‑1                                             TAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCC                                                                                                                       >  1:268352/1‑149                                                 ACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGT                                                                                                                   <  6:92348/149‑1                                                      CACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAA                                                                                                              <  2:268352/149‑1                                                                                                                                                    GCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCC                  <  1:30850/147‑1                                                                                                                                                      CCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAG              >  6:177721/1‑149                                                                                                                                                            caACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGTGATTGCCCGCGAATAGGCCAGAAAAACCAACGACAATCTATAGTTCCTAAAACACAACGCTAAAGGCAAAAACCAGTATCTACCGATCCAAAGGTGGT         >  2:208524/3‑148                                                                                                                                                            CCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGT         <  6:158814/148‑1                                                                                                                                                            CCAAAGGTAAATCTCTTTTTTTGAATATTGTTCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGACAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTG        <  1:208524/149‑1                                                                                                                                                             CACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTGG       >  3:14706/1‑149                                                                                                                                                              ACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGG                                                                                                                 <  8:287570/42‑1                                                                                                                                                              ACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGG                                                                                                                 >  7:287570/1‑42                                                                                                                                                                AGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTGGTTT    <  6:93382/149‑1                                                                                                                                                                  GTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTGGTTTTA  <  5:85573/149‑1                                                                                                                                                                  GTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAG              >  6:172759/1‑137                                                                                                                                                                  GTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAG              <  5:172759/137‑1                                                                                                                                                                                                                                                                                                                        TTGATGTTCAGTAAGTTGGGTGTTTCGCGTTGATGGGAGAAGATTAAAACCACCACCTTTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5999166‑5999327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgttcccacaggTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCAAAACCAACGCCAATCTATCGTTCCTAAAACAGAACGCTAAAGGCAAAAACCACTATCTACCGCTCCAAAGGTGGTGGTTTTA  <  NC_002947/5999357‑5999210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.