| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6056495 | 55 (1.110) | 3 (0.060) | 3/246 | NT | 5.4% | coding (622/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056520 | 53 (1.120) | coding (647/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
GCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6056344‑6056495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctTCACCCCCCTTGTTCAGGGTAGGGCAGGCTTCCA < NC_002947/6056520‑6056487 GCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAG > 1:68350/1‑149GCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAG > 8:25985/1‑149 CTACCGCTATACGCTGAACCGCTCTGCGCCCCGACGCCTGCCGACCACCCATGGACGCCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCGGCTTGGTGAGGGCCACTGCTCCCGTGACCAGGTACTGGAAGC < 2:280890/149‑1 TACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCC > 1:159244/1‑149 CCTGCCGACAACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTTCACCCCCCTTGTTCAGGGTAGGGCAGGCTTCCA < 2:159244/149‑1 CCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGC < 3:274408/101‑1 CCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGC > 4:274408/1‑101 TGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTTCACCCCCCTTGTTCAGGGTAGGGCAGGCTT < 7:277669/93‑1 TGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTTCACCCCCCTTGTTCAGGGTAGGGCAGGCTT > 8:277669/1‑93 GCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6056344‑6056495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctTCACCCCCCTTGTTCAGGGTAGGGCAGGCTTCCA < NC_002947/6056520‑6056487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |