New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059891	57 (1.150)	5 (0.110)	3/244	NT	8.5%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	53 (1.130)					coding (969/1404 nt)	PP_5311	signal transduction protein

CAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059779‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  <  NC_002947/6059929‑6059782                                                                                                                                                                                                                                                                       CAAGACCTTGAGCCTACCCAAAGACCAACCGCAACAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCG                                                                                                                  >  1:41514/1‑149                                CAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTG                                                                                                                                                         <  3:270733/79‑1                                CAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTG                                                                                                                                                         >  4:270733/1‑79                                                         AATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            >  3:103448/1‑99                                                         AATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            >  3:108008/1‑99                                                         AATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            <  4:103448/99‑1                                                         AATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGC                                                                                                            <  4:108008/99‑1                                                                                                             TGCAGTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAA      <  2:262488/149‑1                                                                                                                 GTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGAGCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  >  3:258851/1‑149                                                                                                                                                                                                                                                                       CAAGACCTTGAGCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059779‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAGGTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGTC  <  NC_002947/6059929‑6059782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.