New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1380487 =	45 (0.910)	6 (0.130) +CTGAC	5/246	NT	11.6%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380742 =	50 (1.010)					intergenic (‑130/+5)	PP_t67/PP_t66	tRNA‑Met/tRNA‑Met

ACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACA  >  NC_002947/1380341‑1380632                                                                                                                                                   |                                                                                                                                                  aCGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGcaac                                                                                                                                                 <  7:190225/149‑1 (MQ=255)     aTCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAAc                                                                                                                                             >  1:312032/1‑149 (MQ=255)        cAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAAcccc                                                                                                                                          >  1:165810/1‑149 (MQ=255)                       cTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTaca                                                                                                                            >  7:256453/1‑148 (MQ=255)                             aaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCgg                                                                                                                     >  2:113981‑M1/119‑149 (MQ=255)                                 tGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGt                                                                                                                  <  6:159682/148‑1 (MQ=255)                                  acacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCGGGGttt                                                                                                                >  2:95494‑M1/114‑149 (MQ=255)                                   cacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCGTGGTTTg                                                                                                               >  4:307096‑M1/113‑149 (MQ=255)                                    aGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGt                                                                                                                  <  1:110678/145‑1 (MQ=255)                                    aGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGt                                                                                                                  >  2:110678/1‑145 (MQ=255)                                     gCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGtt                                                                                                             >  4:155441/1‑149 (MQ=255)                                       ctgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCt                                                                                                           >  2:113727‑M1/109‑149 (MQ=255)                                         cTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGa                                                                                                         <  2:165810/149‑1 (MQ=255)                                              cAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGaa                                                                                                     >  4:127529/1‑148 (MQ=255)                                                gggTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAatat                                                                                                  <  3:127529/149‑1 (MQ=255)                                                 ggTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGCAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGAGGGGTTTGTTCTGACGAATATg                                                                                                 >  5:113523/1‑149 (MQ=255)                                                   ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGt                                                                                                                  <  2:148135/130‑1 (MQ=255)                                                        gATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                          >  1:50193/1‑149 (MQ=255)                                                        gATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCgg                                                                                          >  7:256498/1‑149 (MQ=255)                                                         aTAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGc                                                                                            <  2:262877/146‑1 (MQ=255)                                                         aTAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGc                                                                                            >  1:262877/1‑146 (MQ=255)                                                                aTCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCgg                                                                                   <  3:155441/148‑1 (MQ=255)                                                                    tGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAttt                                                                               >  5:230915/1‑148 (MQ=255)                                                                        cACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCTGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAcc                                                                          <  1:253669/149‑1 (MQ=255)                                                                        cACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGCTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAcc                                                                          >  5:314850/1‑149 (MQ=255)                                                                         aCGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAt                                                                                 >  6:291994/1‑141 (MQ=255)                                                                         aCGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAt                                                                                 <  5:291994/141‑1 (MQ=255)                                                                         aCGACATCTCAAGCCTGCGGGTTGCCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcg                                                                         >  7:177113/1‑149 (MQ=255)                                                                          cGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcga                                                                        <  8:256498/149‑1 (MQ=255)                                                                             aaTCTCAAGCCTGGGGTTTGGCATGAGGGTAGGTAAAATGGAGGCGACGAAAGTCAGGGAGGTATAAATCAACATACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGATTATGGTTGCGGGAGCCGGATTTGAACcgacg                                                                      <  6:113523/147‑1 (MQ=255)                                                                                ctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCt                                                                  >  5:170083/1‑149 (MQ=255)                                                                                ctcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCt                                                                  >  8:240706/1‑149 (MQ=255)                                                                                 tcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGTGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCtt                                                                 >  4:288003/1‑149 (MQ=255)                                                                                 tcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                           <  5:32931/139‑1 (MQ=255)                                                                                 tcAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                           >  6:32931/1‑139 (MQ=255)                                                                                   aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTc                                                                <  7:223586/148‑1 (MQ=255)                                                                                   aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTc                                                                >  8:223586/1‑148 (MQ=255)                                                                                    aGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGACCCGGATTTGAACCGACGACCTTCgg                                                              <  8:256453/149‑1 (MQ=255)                                                                                     gCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTg                                                                                                               <  2:95940/99‑1 (MQ=255)                                                                                     gCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTg                                                                                                               >  1:95940/1‑99 (MQ=255)                                                                                        tGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCt                                                                                                           >  6:34278/1‑100 (MQ=255)                                                                                        tGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCt                                                                                                           <  5:34278/100‑1 (MQ=255)                                                                                          cGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAt                                                         <  8:166973/148‑1 (MQ=255)                                                                                             gTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGc                                                     >  7:14622/1‑149 (MQ=255)                                                                                                   aTGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgac                                                >  8:46397/1‑148 (MQ=255)                                                                                                                 aaTCGAGGCGAAGAAAGTCAGGGAGTTATAAAGCAACAACCCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGgctgc                                 <  6:314850/149‑1 (MQ=255)                                                                                                                      aatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTg                                                                                                               >  4:82005‑M1/30‑66 (MQ=255)                                                                                                                      aatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTg                                                                                                               <  3:82005‑M1/37‑1 (MQ=255)                                                                                                                          gacgaAAGTCAGGGAGGTATAAAGCAACAAACACCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGCCGAGCTACCACGCTGATAAATCCcg                        >  6:222363/1‑149 (MQ=25)                                                                                                                                    aGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTggg              >  5:324903/1‑149 (MQ=255)                                                                                                                                      ggAGGTATAAAGCAAGAAACCCCGCGCTGCTATTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc            <  1:102558/149‑1 (MQ=255)                                                                                                                                           tataAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGATCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGAtt       >  2:162040/1‑149 (MQ=255)                                                                                                                                               aaGCAACAAACCACGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTa    >  4:124467/1‑148 (MQ=255)                                                                                                                                                  caacaaACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACa  >  2:156797/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACACAGGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACA  >  NC_002947/1380341‑1380632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.