New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2730749	38 (0.770)	5 (0.110)	5/240	NT	12.4%	coding (86/2361 nt)	polB	DNA polymerase II
	?	NC_002947	= 2730786	35 (0.760)					coding (123/2361 nt)	polB	DNA polymerase II

TCATGCCAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCC  >  NC_002947/2730603‑2730896                                                                                                                                                   |                                                                                                                                                    tCATGCCAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATg                                                                                                                                                   >  4:6700/1‑149 (MQ=255)    tGCCAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCg                                                                                                                                                <  3:6700/149‑1 (MQ=255)      ccAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCggg                                                                                                                                              <  6:316884/149‑1 (MQ=255)       cAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCggg                                                                                                                                              >  7:254649/1‑148 (MQ=255)       aaGGCACGACACAGTTAGAATAACGCCATCTAAATACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGc                                                                                                                                             <  8:254649/148‑1 (MQ=255)                 acaGGGAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTATTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCAACTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGtt                                                                                                                                   >  3:243402/1‑149 (MQ=255)                   aGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGc                                                                                                                                 >  6:14847/1‑149 (MQ=255)                     gTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCCCCGATGCCGGGCCGCGACTGTTGCgg                                                                                                                               >  6:285356/1‑149 (MQ=255)                     gTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCgg                                                                                                                               >  1:171521/1‑149 (MQ=255)                     gTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCgg                                                                                                                               >  5:111674/1‑149 (MQ=255)                           tAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTggcg                                                                                                                         <  5:14847/149‑1 (MQ=255)                            aaCGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGa                                                                                                                                        >  2:147008/1‑133 (MQ=255)                            aaCGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGa                                                                                                                                        <  1:147008/133‑1 (MQ=255)                                    cTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAg                                                                                                                >  2:277927/1‑149 (MQ=255)                                      aaaGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtc                                                                                                              <  3:300709‑M2/149‑3 (MQ=255)                                      aaaGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtc                                                                                                              <  3:42237‑M2/149‑3 (MQ=255)                                       aaGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGTCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcg                                                                                                             <  1:209964‑M2/149‑4 (MQ=255)                                           cAATCCAGCGGTCGACGCAGTGGAGTTTCAGCAGTGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtgg                                                                                                         <  6:180447‑M1/149‑45 (MQ=255)                                                cAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCttt                                                                                                     <  6:310583/148‑1 (MQ=255)                                                    ggTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTc                                                                                                <  1:231098/149‑1 (MQ=255)                                                     gTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTg                                                                                                                            <  7:294470/120‑1 (MQ=255)                                                     gTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTg                                                                                                                            >  8:294470/1‑120 (MQ=255)                                                     gTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTcc                                                                                               >  8:58658/1‑149 (MQ=255)                                                         aCGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGTCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAg                                                                                           <  2:209964/149‑1 (MQ=255)                                                                        agcagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCAc                                                                            >  1:233397/1‑149 (MQ=255)                                                                         gcagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtg                                                                                                          <  1:48044‑M1/118‑44 (MQ=255)                                                                         gcagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcggcccggcatcggtg                                                                                                          >  2:48044‑M1/1‑75 (MQ=255)                                                                         gcagGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACg                                                                           <  3:257074/149‑1 (MQ=255)                                                                            gggTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGccc                                                                        <  1:277927/149‑1 (MQ=255)                                                                                      cTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTgctgct                                                              >  6:33916/1‑149 (MQ=255)                                                                                           ccGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcagcccggcatcggtggcca                                                                                                      >  1:145593‑M1/1‑57 (MQ=255)                                                                                           ccGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGActcctgcgccgccagccgcaacagtcgcagcccggcatcggtggcca                                                                                                      <  2:145593‑M1/104‑48 (MQ=255)                                                                                           ccGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGcc                                                          >  2:8086/1‑148 (MQ=255)                                                                                             ggCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAAc                                                       <  1:8086/149‑1 (MQ=255)                                                                                             ggCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAAc                                                       <  2:233397/149‑1 (MQ=255)                                                                                                      aCGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCggg                                              <  7:58658/149‑1 (MQ=255)                                                                                                              ccGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGTTGCTGGCCAACGAAACCGGGACGAAGCt                                      <  2:171521/149‑1 (MQ=255)                                                                                                                            cGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCTCGACTGTTGCGGCTGTCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCTAGCCACTgcgc                         <  4:42237/148‑1 (MQ=255)                                                                                                                              tGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCt                       >  8:260820/1‑148 (MQ=255)                                                                                                                                gAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGaa                    <  5:285356/149‑1 (MQ=255)                                                                                                                                 aGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAg                   <  4:300709/149‑1 (MQ=255)                                                                                                                                   ttCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGa                 >  5:161636/1‑149 (MQ=255)                                                                                                                                   ttCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGa                 >  7:51268/1‑149 (MQ=255)                                                                                                                                      tggctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTgctgct                                                              <  2:83761/101‑1 (MQ=255)                                                                                                                                      tggctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTgctgct                                                              >  1:83761/1‑101 (MQ=255)                                                                                                                                      tggctggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACtt              >  2:149527/1‑149 (MQ=255)                                                                                                                                          tggcCACCGATGCCGGGCTGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgg                                                       <  2:145593‑M2/104‑58 (MQ=255)                                                                                                                                          tggcCACCGATGCCGGGCTGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgg                                                       >  1:145593‑M2/1‑47 (MQ=255)                                                                                                                                          tggcCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAg          >  3:281437/1‑149 (MQ=255)                                                                                                                                             ccACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaacactgctgaaactccactgcgtcgaccgctggattg       <  6:180447‑M2/149‑106 (MQ=255)                                                                                                                                             ccACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGGGcga       >  1:46607/1‑147 (MQ=255)                                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgc                                     >  2:48044‑M2/1‑43 (MQ=255)                                                                                                                                              cACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGtcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgc                                     <  1:48044‑M2/118‑76 (MQ=255)                                                                                                                                               aCCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCg     >  1:135242/1‑149 (MQ=255)                                                                                                                                                 cGActcctgcgccgccagccgcaacagtcgcggcccgacatcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgtctt   <  1:209964‑M1/149‑147 (MQ=255)                                                                                                                                                 cGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGcc   >  8:295590/1‑149 (MQ=255)                                                                                                                                                  gActcctgcgccgccagccgcaacagtcgcggcccggcatcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgtcttt  <  3:42237‑M1/149‑148 (MQ=255)                                                                                                                                                  gActcctgcgccgccagccgcaacagtcgcggcccggcatcggtggccagccagaactccacgcaggtgccttccggcgtatcgtgccagtgccgggtcaggacaaaaccctgctgcaactccactgcgtcgacctctggattgtcttt  <  3:300709‑M1/149‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCATGCCAGGCACGACACAGGTAGAATAACGCCATCTAAAGACAATCCAGAGGTCGACGCAGTGGAGTTGCAGCAGGGTTTTGTCCTGACCCGGCACTGGCACGATACGCCGGAAGGCACCTGCGTGGAGTTCTGGCTGGCCACCGATGCCGGGCCGCGACTGTTGCGGCTGGCGGCGCAGGAGTCGGTGGCTTTCATTCCTCAGGCGCAGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCC  >  NC_002947/2730603‑2730896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.