New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3364666 =56 (1.130)5 (0.110) 4/246 NT 8.9% coding (560/879 nt) PP_2961 LysR family transcriptional regulator
?NC_002947 3364702 = 49 (1.030)coding (524/879 nt) PP_2961 LysR family transcriptional regulator

GATGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGC  >  NC_002947/3364518‑3364802
                                                                                                                                                    |                                                                                                                                        
gaTGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTtgt                                                                                                                                          <  2:69362/149‑1 (MQ=255)
     ccAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCt                                                                                                                                     <  2:136108/149‑1 (MQ=255)
     aacgattacaacgaagacctgctcatggaaaacatcgacctggccatccgcattggtttggtgaagagcgaggggctggtggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGc                                                                                                                                       >  2:270669‑M1/144‑147 (MQ=255)
      cAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTg                                                                                                                                    <  3:50234/149‑1 (MQ=255)
               gAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTcgg                                                                                                                           >  2:25480/1‑149 (MQ=255)
                  gACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTgg                                                                                                                                        <  6:278446/133‑1 (MQ=255)
                  gACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTgg                                                                                                                                        >  5:278446/1‑133 (MQ=255)
                   aCCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGtt                                                                                                                              <  1:128818/142‑1 (MQ=255)
                   aCCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGtt                                                                                                                              >  2:128818/1‑142 (MQ=255)
                    ccATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGc                                                                                                                      >  5:76054/1‑149 (MQ=255)
                       tctcACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTcg                                                                                                                   >  2:250086/1‑149 (MQ=255)
                           aCGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTcgc                                                                                                                  >  1:109341/1‑146 (MQ=255)
                           aCGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTcgc                                                                                                                  <  2:109341/146‑1 (MQ=255)
                              aaTGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGt                                                                                                                <  3:57189/145‑1 (MQ=255)
                              aaTGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGt                                                                                                                >  4:57189/1‑145 (MQ=255)
                                     catcgacctggccatccgcattggtttggtgaagagcgaggggctggtggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     >  2:272344‑M1/112‑149 (MQ=255)
                                      cGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGtggc                                                                                                             <  3:269942/140‑1 (MQ=255)
                                      cGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGtggc                                                                                                             >  4:269942/1‑140 (MQ=255)
                                      atcgacctggccatccgcattggtttggtgaagagcgaggggctggtggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATgg                                                                                                    >  4:66949‑M1/111‑149 (MQ=255)
                                       tcgacctggccatccgcattggtttggtgaagagcgaggggctggtggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGc                                                                                                   >  3:106927‑M1/110‑149 (MQ=255)
                                       gCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATgg                                                                                                    <  7:287658/148‑1 (MQ=255)
                                              ttgCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATc                                                                                               >  8:293578/1‑146 (MQ=255)
                                                gCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCgaga                                                                                           <  7:293578/148‑1 (MQ=255)
                                                        cGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGt                                                                                  <  1:25480/149‑1 (MQ=255)
                                                          ttGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTg                                                                                 >  8:213340/1‑148 (MQ=255)
                                                            gCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTgca                                                                               <  3:32575/148‑1 (MQ=255)
                                                             ccTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTgcag                                                                              <  3:185803/148‑1 (MQ=255)
                                                              cTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTgcagca                                                                            >  3:255406/1‑149 (MQ=255)
                                                              cTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTgcagca                                                                            >  8:133120/1‑149 (MQ=255)
                                                              cTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTgcagca                                                                            >  6:300121/1‑149 (MQ=255)
                                                                 tGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGTGATCGAGATAGGCCGGTGCAGCATa                                                                          <  7:214280/148‑1 (MQ=255)
                                                                 tGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATa                                                                          <  1:250086/148‑1 (MQ=255)
                                                                       cAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGc                                                                   <  4:255406/149‑1 (MQ=255)
                                                                          ccTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGAt                                                                                          >  3:264490/1‑123 (MQ=255)
                                                                          ccTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGAt                                                                                          <  4:264490/123‑1 (MQ=255)
                                                                            tCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     >  3:47492/1‑110 (MQ=255)
                                                                            tCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     <  4:47492/110‑1 (MQ=255)
                                                                              aaGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCgtgt                                                              <  7:28513/147‑1 (MQ=255)
                                                                                    ttCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGATGGTGc                                                      >  2:61605/1‑149 (MQ=255)
                                                                                    tggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     >  5:237047‑M1/65‑102 (MQ=255)
                                                                                    tggccgtgcccctgggcaccagcacacggcgagtctatgctgcaccggcctatctcgatcgccaTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     <  6:237047‑M1/38‑1 (MQ=255)
                                                                                          aCGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAggg                                                <  6:76054/149‑1 (MQ=255)
                                                                                                 gTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGc                                         <  8:169653/149‑1 (MQ=255)
                                                                                                  tGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGcc                                        <  7:133120/149‑1 (MQ=255)
                                                                                                   gAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTg                                                                                 <  2:135739/107‑1 (MQ=255)
                                                                                                   gAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTg                                                                                 >  1:135739/1‑107 (MQ=255)
                                                                                                     aGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGccac                                      >  5:230509/1‑148 (MQ=255)
                                                                                                              ggTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCg                            <  7:213340/149‑1 (MQ=255)
                                                                                                              ggTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCg                            <  6:230509/149‑1 (MQ=255)
                                                                                                                tCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     <  8:110245/74‑1 (MQ=255)
                                                                                                                tCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATg                                                                                                     >  7:110245/1‑74 (MQ=255)
                                                                                                                  gTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCgaga                                                                                           >  8:115570/1‑82 (MQ=255)
                                                                                                                  gTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCgaga                                                                                           <  7:115570/82‑1 (MQ=255)
                                                                                                                     aTGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTc                      <  5:300121/148‑1 (MQ=255)
                                                                                                                        cTCAAGCAAGGTGAAGGCGATGCAATTGTGGCCAGCCAGTTCGGCCGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCCGTgcacc                                                                             >  5:71729/1‑88 (MQ=255)
                                                                                                                         tCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCacca                  >  1:37152/1‑148 (MQ=255)
                                                                                                                            agcaagGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGctc                         >  6:274963/1‑138 (MQ=255)
                                                                                                                            agcaagGTGAAGGCGATGCAGTTGTGGCCTCCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGctc                         <  5:274963/138‑1 (MQ=255)
                                                                                                                             gcaagGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAgg                                                                                       >  1:119677/1‑75 (MQ=255)
                                                                                                                             gcaagGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAgg                                                                                       <  2:119677/75‑1 (MQ=255)
                                                                                                                                agGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGccacca                                    <  4:118542/123‑1 (MQ=255)
                                                                                                                                agGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGccacca                                    >  3:118542/1‑123 (MQ=255)
                                                                                                                                acgctcaGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATg          <  1:112889/143‑1 (MQ=255)
                                                                                                                                     aaGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGAt     >  6:273711/1‑149 (MQ=255)
                                                                                                                                        gCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGGTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGc  <  5:273711/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                        
GATGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCTGCCAGTTCGGCGGGCTCGCGTGGCTGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGC  >  NC_002947/3364518‑3364802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.