New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4191286 = | 50 (1.010) | 3 (0.060) | 3/246 | NT | 6.1% | intergenic (‑618/‑539) | PP_5612/PP_5613 | hypothetical protein/hypothetical protein |
? | NC_002947 | 4191312 = | 45 (0.950) | intergenic (‑644/‑513) | PP_5612/PP_5613 | hypothetical protein/hypothetical protein |
TTGACGGATAATATCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGG > NC_002947/4191139‑4191430 | gcaggtcgacccaagggggggcggatgccctccttgtgtgatgaatcaacctgatcggcttgcttcatcaggctctgtcgtctccggcgaactaccaagcttcgacgcaagcggagcgcgcaggcgagaggatggtcgcccgaagggcc > 2:289346‑M1/148‑149 (MQ=255) tGACGGATAATATCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAAcc > 3:35781/1‑148 (MQ=255) aCGGATAATATCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAg < 4:35781/149‑1 (MQ=255) ggATAATATCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGcc < 1:133920/149‑1 (MQ=255) aagggggggcggatgccctccttgtgtgatgaatcaacctgatcggcttgcttcatcaggctctgtcgtctccggcgaactaccaagcttcgacgcaagcggagcgcgcaggcgagaggatggtcgcccgaagggc < 7:73225‑M1/1‑1 (MQ=255) aagggggggcggatgccctccttgtgtgatgaatcaacctgatcggcttgcttcatcaggctctgtcgtctccggcgaactaccaagcttcgacgcaagcggagcgcgcaggcgagaggatggtcgcccgaagggc > 8:73225‑M1/136‑136 (MQ=255) tCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTggg > 3:150604/1‑149 (MQ=255) ccATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTgggg > 8:72960/1‑149 (MQ=255) aTACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGCCTGTCGTAAACCGAGCCC‑GCCTGGGGCa < 1:178104/149‑1 (MQ=255) aCTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAgg > 8:132898/1‑149 (MQ=255) cACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCt > 6:300842/1‑149 (MQ=255) aCTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCtt > 5:242812/1‑149 (MQ=255) ctctctctGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTc > 8:60297/1‑149 (MQ=255) tctGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCggg < 3:86944/147‑1 (MQ=255) tGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGAc > 2:247843/1‑149 (MQ=255) atatTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGa < 7:132898/146‑1 (MQ=255) atatTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGa < 4:59614/146‑1 (MQ=255) tatTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCAt > 1:40273/1‑149 (MQ=255) tttGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATcc > 1:240430/1‑149 (MQ=255) tttGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATc > 8:94778/1‑148 (MQ=255) aaTTTCGCGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAACTCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCtctc < 7:289569/149‑1 (MQ=255) aaTTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCtctc < 7:56350/149‑1 (MQ=255) gTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTgcgc > 6:140600/1‑149 (MQ=255) cgcAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCt < 7:72960/149‑1 (MQ=255) agcaTCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGccc > 2:188704/1‑111 (MQ=255) agcaTCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGccc < 1:188704/111‑1 (MQ=255) agcaTCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGc < 3:145900/149‑1 (MQ=255) caTCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGt > 4:260316/1‑149 (MQ=255) aaCTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCtt < 8:208474/141‑1 (MQ=255) aaCTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGaa < 5:300842/149‑1 (MQ=255) aaCTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTAACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCtt > 7:208474/1‑141 (MQ=255) aCTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAg > 8:89203/1‑149 (MQ=255) cTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGc < 3:260316/149‑1 (MQ=255) ccTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGaa < 4:188345/144‑1 (MQ=255) ccTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGaa > 3:188345/1‑144 (MQ=255) ccTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTg < 4:150604/149‑1 (MQ=255) cTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTgg < 7:94778/149‑1 (MQ=255) cTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTgg < 8:273439/149‑1 (MQ=255) ttAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTg < 5:259195/147‑1 (MQ=255) ttAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTg > 6:259195/1‑147 (MQ=255) aaGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCg < 2:240430/149‑1 (MQ=255) aaGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCg < 2:40273/149‑1 (MQ=255) aactaccaagcttcgacgcaagcggagcgcgcaggcgagaggatggtcgcccgaagggCCGAGCCC‑GCCTGGGGCAGGtctc > 1:166214‑M1/59‑82 (MQ=255) aactaccaagcttcgacgcaagcggagcgcgcaggcgagaggatggtcgcccgaagggCCGAGCCC‑GCCTGGGGCAGGtctc < 2:166214‑M1/24‑1 (MQ=255) tGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACagag > 5:38445/1‑149 (MQ=255) ttcAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCtga > 5:14462/1‑149 (MQ=255) cAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCtgat > 6:110579/1‑148 (MQ=255) cAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCtga < 7:60297/147‑1 (MQ=255) aTCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGaa < 1:247843/149‑1 (MQ=255) ttATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGaagc > 7:87249/1‑147 (MQ=255) tgtgCGCGCCCTTACGGGGCGGCTGTCGTAAAGCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCACTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGaatcaacc < 7:89203/148‑3 (MQ=255) tgtgCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGcc < 5:140600/149‑1 (MQ=255) aCGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGa < 6:14462/147‑1 (MQ=255) gcggcTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGTGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAATCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAATCAACCTGATCGGCTTGCTtcatca < 6:242812/149‑1 (MQ=37) tcgcccgaagggCCGAGACCTGCCCCAGGCGGG‑CTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCACGCCGATCAGGTTGATTCATcaca < 5:83322‑M1/137‑1 (MQ=255) agTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATcacac > 1:207191/2‑147 (MQ=255) tCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGcc < 2:191855/95‑1 (MQ=255) tCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGcc > 1:191855/1‑95 (MQ=255) tAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAaggagg > 4:175615/1‑149 (MQ=255) | TTGACGGATAATATCCATACTCATTTACCACTCTCTCTGATATTTGAATTTCGAGTTAACAGCGCAGCATCAACTGCCTTAGACCCCAAGAAATCCGCCTGTTCTTCAATCATTATGTGCGCGCCCTTACGGGGCGGCTGTCGTAAACCGAGCCC‑GCCTGGGGCAGGTCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGG > NC_002947/4191139‑4191430 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |