| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5288394 = | 32 (0.650) | 5 (0.130) | 4/196 | NT | 15.3% | intergenic (‑75/+109) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | 5288488 = | 31 (0.820) | intergenic (‑169/+15) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
GGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTG > NC_002947/5288248‑5288527 | ggCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATgg < 8:7254/147‑1 (MQ=255) ccaaccagttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGc > 1:196838‑M1/147‑149 (MQ=255) aaccagttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgcgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCct < 2:260492‑M1/5‑1 (MQ=255) agttcctgggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTc > 7:73233‑M1/141‑149 (MQ=255) gggcatgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCt < 8:252077‑M1/16‑1 (MQ=255) catgaccggcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGc < 8:126423‑M1/19‑1 (MQ=255) gTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCAAGCCCGcgaag < 8:155642/149‑5 (MQ=255) gcctgccgaccttcctggctgtggatgtgatgaagcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtatggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTcc < 5:286141‑M1/26‑1 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTcgcg > 6:171624/1‑122 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTcgcg < 5:171624/122‑1 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGccc > 7:34637/1‑131 (MQ=255) gacgaATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGccc < 8:34637/131‑1 (MQ=255) gaATACCTGGAGTTCTTCGGATCGGGTTTGTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGc > 1:184429/1‑127 (MQ=255) gaATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGc < 2:184429/126‑1 (MQ=255) ccTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 5:298621/149‑1 (MQ=255) ccTGGAGTGCTTCGGATCGGGTTT‑TGACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCtt < 6:55087/149‑1 (MQ=255) cTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCca > 3:261811/1‑129 (MQ=255) cTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCca < 4:261811/129‑1 (MQ=255) ttcttcGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCAAGCCCg > 2:266894/1‑117 (MQ=255) cGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCg < 4:281401/147‑1 (MQ=255) cGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCg < 4:276919/147‑1 (MQ=255) gcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCtt < 4:265997‑M1/17‑1 (MQ=255) gcgcccggatgtgccggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCtt > 3:265997‑M1/89‑105 (MQ=255) aTCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATa > 7:42584/1‑149 (MQ=255) gTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCtgt < 8:687/149‑1 (MQ=255) ttt‑tCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCtgtg < 8:42584/149‑1 (MQ=255) acaGCAGGGCCGGGGGTTGCGCAGTGCAAGGACTAGCAAACCGCTTGTCGCGGCCAAGTCCAGCGGCGCCTGTATGGGCCGCTGCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGa < 4:67444/147‑1 (MQ=255) cggcggcgttggcagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCTCAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCgg > 3:67701‑M1/75‑149 (MQ=255) aTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGTGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCgg < 8:59535/149‑1 (MQ=255) tCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTTCCCGCTCCCACCAGTACTGCCAAGTCCTTGAAACC‑TGCGTAATACCATTGGGAGCggg > 3:259969/1‑149 (MQ=255) gggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑t < 8:81700/124‑1 (MQ=255) gggCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑t > 7:81700/1‑124 (MQ=255) cagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGa < 4:110303‑M1/71‑1 (MQ=255) cagcttatgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGa > 3:110303‑M1/63‑133 (MQ=255) atgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCgg > 4:88254‑M1/57‑131 (MQ=255) atgaggcccatctggacaaggtgtttggcaaggcacagtaattttatgtctgtaccGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCgg < 3:88254‑M1/75‑1 (MQ=255) aaGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGGGTTCCCCCTGCCCCAAGGACGGGCCAGGGCCTGGAACC‑AGCGGAAAACCGTGGGGGGCGGGGCCGCCCGCGAACAGGcccgga > 8:32742/1‑143 (MQ=255) gATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCGTTCCCCCGCCCACAAGGACAGCAAAAGGCGTGAAAAC‑AGCGGAATACCAGTGGGGGCGGGGAAGCCAGCGCAAAGGCCGGGAAAGa > 8:28156/1‑148 (MQ=255) ttAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTACCACAAGTTCTGCAAAGTCCGTGAAACC‑AGCGTAATACCAGGGGGAGCCGGGCAGCCCGCGAAGAGGCCGGTTCAGACa > 3:221957/1‑148 (MQ=255) gATAACCGCTTGTCTAGGCCAAGCCCAGCGGCGCCTGTAGGGGCCTCTTCGCGGGGTTGCCGGCTCCCAAAAGTACTGAAAAGTCCTTGAAACC‑TGCTTAATACGTGTGGGAGCGGGCAAGCCCGCGAagag < 6:99397/132‑1 (MQ=38) gATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTTCCCGCTACCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAagag > 5:99397/1‑132 (MQ=255) gATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCCCACCCACAAGTACTGCAAAGTACTTGAAACC‑TGCGTAATACCAGTGGGAGCCGGCAAGCCCGCCAAGAGGCCCGTACAGACaaaa > 6:146682/1‑148 (MQ=38) cGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGc < 8:122682/108‑1 (MQ=255) cGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGc > 7:122682/1‑108 (MQ=255) gTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCATTCCCCCTCCCCCAAATAATGCAAAGTCCGTGAAACCAGGCGAAAAACC‑GTGGGAGCGGGCCACCCCCCGCACAGGCCCGGAGAGACATAAAATTAATGTGcc > 8:169348/1‑149 (MQ=255) aGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGGCCTTGAATCC‑TGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACCGCCATAAAATTACTGTGCCTTGCCAAACACCTTg > 7:74743/1‑149 (MQ=255) | GGCAGCAGCGGAAATCGAGCCGCAGTCGATGACGGCGACGAATACCTGGAGTTCTTCGGATCGGGTTT‑TCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACC‑TGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTG > NC_002947/5288248‑5288527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |