| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5584642 = | 53 (1.070) | 3 (0.060) | 3/240 | NT | 5.5% | coding (1090/2259 nt) | parC | DNA topoisomerase IV subunit A |
| ? | NC_002947 | 5584675 = | 54 (1.170) | coding (1057/2259 nt) | parC | DNA topoisomerase IV subunit A | |||||
TTCGATCAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGTGCTGCATCAGCTCGTCGACA > NC_002947/5584496‑5584790 | ttCGATCAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTAt < 8:31737/149‑1 (MQ=255) cGATCAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGATGAACGGTAtt < 7:200016/148‑1 (MQ=255) aTCAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGt > 6:210713/1‑149 (MQ=255) tCAGAGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACTTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTg > 7:67063/1‑149 (MQ=255) atcatcccgcgatccaaccgcgtcgatgtcgacgagctgatgcagcacctgttcgctaccaccgacctggaaagcacctatcgggtcaacgtgaatatcatcggcctggacggccggccgcagttgaaaaacctgcgaacccTATTGGt < 6:113792‑M1/7‑1 (MQ=255) cAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGc > 3:41426/1‑149 (MQ=255) aGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGc < 3:291977/148‑1 (MQ=255) gggATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGc > 5:229506/1‑148 (MQ=255) tatTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTc < 6:229506/149‑1 (MQ=255) tCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCaa > 3:7706/1‑149 (MQ=255) ggTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATa < 2:117315/149‑1 (MQ=255) cctggATGAAGTGATCCACATCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAgg < 3:294305/146‑1 (MQ=255) cctggATGAAGTGATCCACATCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAgg > 4:294305/4‑149 (MQ=255) acgtttgatgTGGTTCAGTTCTTTGATGTTGAGGAATGTAGTGAGCAAACGGTCAAACAGGTGCAGACGGTTT‑TCGAACTTTTCCAGACTTTGCTGCTGTCGGCGACGAACGGTATTGGTGCGGATGTCCAGCCACTCCACCTATAgt < 8:295205/143‑2 (MQ=255) acgagctgatgcagcacctgttcgctaccaccgacctggaaagcacctatcgggtcaacgtgaatatcatcggcctggacggccggccgcagttgaaaaacctgcgaacccTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGtt > 2:261958‑M1/112‑149 (MQ=255) atgctgTGGAACACTGCATCCAGGTTGAGGAATGCAGTTAGCAAACCGTCCCACAGGTGGAGACGCTTC‑TCGCCCTTATCCAGCCGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCa < 4:166433/127‑1 (MQ=255) tCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACTTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTc < 8:67063/149‑1 (MQ=255) cTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAAc < 4:41426/149‑1 (MQ=255) aTCAAGGTTGATGAATGCAGTGAGGAAACCGTCCAAGTGGTGCAGACGGTTC‑TGGTCCTTATCCAGAGCATGCTGCAGGCGGCGACGAACTGTATTGGGGCGGATCTCCAGCCACTCCACCAATAGGGTTCGCAGGTTATTCATCTGc < 7:299153/148‑1 (MQ=255) ccAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGcggc > 3:246346/1‑149 (MQ=255) cAGTTTGAGGAATTCATTTATCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTc < 8:123060/139‑1 (MQ=255) cAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTc > 7:123060/1‑139 (MQ=255) cAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGcggc < 2:62069/148‑1 (MQ=255) caccgacctggaaagcacctatcgggtcaacgtgaatatcatcggcctggacggccggccgcagttgaaaaacctgcgaacccTAtt < 2:271158‑M1/4‑1 (MQ=255) caccgacctggaaagcacctatcgggtcaacgtgaatatcatcggcctggacggccggccgcagttgaaaaacctgcgaacccTAtt > 1:271158‑M1/84‑87 (MQ=255) gCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTTCGGCCGGCCGTCCAGGcc > 4:243111/1‑149 (MQ=255) aGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCga > 6:143680/1‑149 (MQ=255) aGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCga > 1:148749/1‑149 (MQ=255) gTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGCTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCga > 4:41781/1‑148 (MQ=255) gCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGata < 8:268698/149‑1 (MQ=255) gCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGata < 4:7706/149‑1 (MQ=255) gCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGata > 7:268698/1‑149 (MQ=255) aaCCGTCCAACAGGTGCAGACGCTTCGTCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATAtt > 1:4088/1‑149 (MQ=255) cGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACg < 3:97121/149‑1 (MQ=255) gTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGt < 5:210713/149‑1 (MQ=255) tCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGtt < 4:246346/149‑1 (MQ=255) ccAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTg < 3:243111/149‑1 (MQ=255) aaCAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGAc > 6:275778/1‑149 (MQ=255) aCAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAAc < 1:248323/110‑1 (MQ=255) aCAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAAc > 2:248323/1‑110 (MQ=255) aCAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGAcc > 8:55762/1‑149 (MQ=255) ggTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGa < 2:148749/149‑1 (MQ=255) cAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGcg < 4:135030/107‑1 (MQ=255) cAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGcg > 3:135030/1‑107 (MQ=255) cAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACAGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAgg > 6:282898/1‑149 (MQ=255) gCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGATGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATa < 1:152275/142‑1 (MQ=255) gCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGATGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATa > 2:152275/1‑142 (MQ=255) gACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGt > 7:132398/1‑149 (MQ=255) cTTATCCAGACTATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCgg < 3:41781/149‑1 (MQ=255) ccggccgcagttgaaaaacctgcgaacccTATTGGTGCGGAACTCCAGCCACTccacc < 2:232025‑M1/29‑1 (MQ=255) ccggccgcagttgaaaaacctgcgaacccTATTGGTGCGGAACTCCAGCCACTccacc > 1:232025‑M1/30‑58 (MQ=255) gACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGc > 6:162167/1‑148 (MQ=255) tgctgcAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAg < 2:4088/149‑1 (MQ=255) ctgcAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAg < 7:198524/147‑1 (MQ=255) gcAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGtgc > 4:110370/1‑149 (MQ=255) ggcgACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGTGCTGCAt > 4:149033/1‑148 (MQ=255) ggcgACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGTGCTGCATc < 3:110370/149‑1 (MQ=255) gacgaACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCggtgg > 3:144071/1‑126 (MQ=255) gacgaACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCggtgg < 4:144071/126‑1 (MQ=255) acgaACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCgatgat > 4:43113/1‑87 (MQ=255) acgaACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCgatgat < 3:43113/87‑1 (MQ=255) aaCGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGtgctgc < 1:144295/139‑1 (MQ=255) aaCGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGtgctgc > 2:144295/1‑139 (MQ=255) TATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGTGCTGCATCAGCTCGTCGACa > 4:103598‑M1/1‑149 (MQ=255) | TTCGATCAGGGCCTGCTTGGGATATTCCTCGGTACGGATGATGTGGATCACTTCATCCAGGTTGAGGAATGCAGTGAGCAAACCGTCCAACAGGTGCAGACGCTTC‑TCGACCTTATCCAGACGATGCTGCAGGCGGCGACGAACGGTATTGGTGCGGAACTCCAGCCACTCCACCAATAGGGTTCGCAGGTTTTTCAACTGCGGCCGGCCGTCCAGGCCGATGATATTCACGTTGACCCGATAGGTGCTTTCCAGGTCGGTGGTAGCGAACAGGTGCTGCATCAGCTCGTCGACA > NC_002947/5584496‑5584790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |