New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5586334 =	46 (0.930)	3 (0.060)	3/242	NT	6.9%	coding (952/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	5586372 =	38 (0.810)					coding (914/1026 nt)	PP_4914	phytase‑like protein

TGGCAAGAAACAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGACCAGCAACGCTCGACCTTGCCACTGTC  >  NC_002947/5586188‑5586481                                                                                                                                                   |                                                                                                                                                    gaacgtaacgcctaccgggtgtgccgacgtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaggg                                                                                                                                                   >  2:34452‑M1/147‑149 (MQ=255)  aacgtaaggcctacggggtgttccgacgtgatatcgagagtgggaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaGGgc                                                                                                                                                  >  3:137309‑M1/146‑149 (MQ=255)   gCAAGAAACAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGgcg                                                                                                                                                 >  4:147234/1‑149 (MQ=255)   gCAAGAAACAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGgc                                                                                                                                                  <  2:136035/148‑1 (MQ=255)        acgcctaccgggtgtgccgacgtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaGGGCGCCgtt                                                                                                                                            <  7:45218‑M1/10‑1 (MQ=255)        aaaCAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgtt                                                                                                                                            >  3:84918/1‑149 (MQ=255)        aaaCAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgtt                                                                                                                                            <  6:41392/149‑1 (MQ=255)              cgccgccgcCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGATGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttgtt                                                                                                                                      <  7:64468/149‑1 (MQ=255)              cgccgccgcCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttgtt                                                                                                                                      <  5:263145/149‑1 (MQ=255)              accgggtgtgccgacgtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaagg                                                                                                                                                    <  1:99754‑M1/2‑1 (MQ=255)              accgggtgtgccgacgtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaagg                                                                                                                                                    >  2:99754‑M1/134‑135 (MQ=255)                   ccgccCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCa                                                                                                                                 <  1:185567/149‑1 (MQ=255)                             gtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaagg                                                                                                                                                    >  2:269613‑M1/119‑120 (MQ=255)                             gtgatatcgacagtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaagg                                                                                                                                                    <  1:269613‑M1/2‑1 (MQ=255)                                  tcatcaGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGgcgc                                                                                                                  <  6:51515/149‑1 (MQ=255)                                     tcaGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCt                                                                                                               >  8:10856/1‑149 (MQ=255)                                      caGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttg                                                                                                                                        >  1:85752/1‑123 (MQ=255)                                      caGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttg                                                                                                                                        <  2:85752/123‑1 (MQ=255)                                       aGTTACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGGTCCAGCCGCCTTCCGGTGCGTCGAATCGCCAGACTACCGGCCGGGTTTCACCGTCCGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTg                                                                                                             <  7:246291/149‑1 (MQ=255)                                        agtggcaaggtcgagcgttgctggtcgttcgctgctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTgg                                                                                                            >  8:45218‑M1/108‑149 (MQ=255)                                         tAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTgg                                                                                                            >  2:290196/1‑148 (MQ=255)                                             ttGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttgtt                                                                                                                                      >  8:205163/1‑118 (MQ=255)                                             ttGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCgttgttgtt                                                                                                                                      <  7:205163/118‑1 (MQ=255)                                                 ccGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCg                                                                                                       <  1:239778/145‑1 (MQ=255)                                                 ccGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCg                                                                                                       >  2:239778/1‑145 (MQ=255)                                                 ccGCGCGCTTGCCCGGCACCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCa                                                                                                   >  4:175274/1‑149 (MQ=255)                                                   gcgcgcTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTg                                                                                                             >  1:76354/1‑137 (MQ=255)                                                   gcgcgcTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTg                                                                                                             <  2:76354/137‑1 (MQ=255)                                                       gcTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTgg                                                                                                            >  4:246001/1‑134 (MQ=255)                                                       gcTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTgg                                                                                                            <  3:246001/134‑1 (MQ=255)                                                         ttGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGc                                                                                                           <  5:268484/133‑1 (MQ=255)                                                         ttGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGc                                                                                                           >  6:268484/1‑133 (MQ=255)                                                            cccGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTc                                                                                         <  7:10856/148‑1 (MQ=255)                                                              cGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCggc                                                                                      <  3:147234/149‑1 (MQ=255)                                                                       gCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCaaa                                                                             >  7:170189/1‑149 (MQ=255)                                                                       gCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCaaa                                                                             >  5:40908/1‑149 (MQ=255)                                                                       gCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCAAGGAGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCaaa                                                                             >  6:68908/1‑149 (MQ=255)                                                                         gctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAg                                                                                                                      >  8:153815‑M1/75‑106 (MQ=255)                                                                         gctgatgcgctggtcgagtcacggcgctacgcgcagccgtttggcctggccgaagcactggtgatcgatgccaaGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAg                                                                                                                      <  7:153815‑M1/32‑1 (MQ=255)                                                                               tttGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTgcg                                                                     >  7:118173/1‑149 (MQ=255)                                                                                   gcgcTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTg                                                                                                             >  5:46582/1‑105 (MQ=255)                                                                                   gcgcTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTg                                                                                                             <  6:46582/105‑1 (MQ=255)                                                                                     gcTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAgc                                                               >  2:81983/1‑149 (MQ=255)                                                                                             cgccTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGAc                                                       <  6:40908/149‑1 (MQ=255)                                                                                                cTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCg                                                    <  1:81983/149‑1 (MQ=255)                                                                                                   ccGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGAc                                                  <  8:118173/148‑1 (MQ=255)                                                                                                      gTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAgc                                              <  3:175274/149‑1 (MQ=255)                                                                                                              aaGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATcag                                       >  5:252226/1‑148 (MQ=255)                                                                                                                gcgcCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCggcca                                                                                    >  8:249423/1‑101 (MQ=255)                                                                                                                     aGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAAc                               >  3:284928/1‑149 (MQ=255)                                                                                                                          acCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTGCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCATCGCATCAGCAGCGAACGACCa                          <  6:252226/149‑1 (MQ=255)                                                                                                                           ccggccggGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGTCCAg                         <  4:84918/149‑1 (MQ=255)                                                                                                                                       cACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGACCAGCAACGCTCGAcc             >  7:102640/1‑149 (MQ=255)                                                                                                                                       cACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGACCAGCAACGCTCGAc              <  6:306143/148‑1 (MQ=255)                                                                                                                                        aCCGTCGGCACGGGTGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAg                                               <  3:222700/114‑1 (MQ=255)                                                                                                                                        aCCGTCGGCACGGGTGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAg                                               >  4:222700/1‑114 (MQ=255)                                                                                                                                        aCCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGa                                                   <  3:47700/110‑1 (MQ=255)                                                                                                                                        aCCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGa                                                   >  4:47700/1‑110 (MQ=255)                                                                                                                                                  cGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGACCAGCAACGCTCGACCTTGCCACTGTc  <  4:284928/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGGCAAGAAACAGCGCCGCCGCCCAGGCGACGATCATCAGTAACTTGCCCGCGCGCTTGCCCGGCGCCTGGCTCATGGTTTGGCGCTCCAGCCGCCTTCCGGTGCGTCGAAGCGCCAGACGACCGGCCGGGTTTCACCGTCGGCACGGGCGCCGTTGTTGTTGTCCAGGCCAATCCAGGCGCCCTTGGCATCGATCACCAGTGCTTCGGCCAGGCCAAACGGCTGCGCGTAGCGCCGTGACTCGACCAGCGCATCAGCAGCGAACGACCAGCAACGCTCGACCTTGCCACTGTC  >  NC_002947/5586188‑5586481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.