New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 494433	55 (1.110)	3 (0.060)	3/242	NT	6.0%	coding (194/768 nt)	djlA	DnaJ‑like protein DjlA
	?	NC_002947	= 494462	42 (0.900)					coding (223/768 nt)	djlA	DnaJ‑like protein DjlA

TGCGTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTGCGGCGCATCAGTCAG  >  NC_002947/494314‑494605                                                                                                                                                     |                                                                                                                                                tGCGTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAg                                                                                                                                                 >  1:39935/1‑149 (MQ=255) tGCGTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAg                                                                                                                                                 <  1:83965/149‑1 (MQ=255)   cGTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGcc                                                                                                                                               <  5:230911‑M2/149‑3 (MQ=255)    gTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccg                                                                                                                                              >  7:75702‑M2/1‑146 (MQ=255)     ttGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGcc                                                                                                                                               <  2:66521‑M2/147‑3 (MQ=255)       gCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccgag                                                                                                                                            >  3:208913‑M2/1‑143 (MQ=255)        cTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccgag                                                                                                                                            <  7:112624‑M2/147‑6 (MQ=255)            ggCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAgcagca                                                                                                                                       <  6:230911/148‑1 (MQ=255)            ggCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCat                                                                                                                                      <  2:67325/149‑1 (MQ=255)             gCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGTGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCata                                                                                                                                     >  3:123006/1‑149 (MQ=255)               aGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATc                                                                                                                                   <  1:281229/149‑1 (MQ=255)                  cctgcgtccgccgGCTGCGCTTGCTAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATTGCCGGGTAGCCGAGCAGCATATCcag                                                                                                                                <  4:189511/142‑1 (MQ=255)                   cATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCcag                                                                                                                                >  8:115491/1‑148 (MQ=255)                           gccgGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGt                                                                                                                       <  4:144782/149‑1 (MQ=255)                            ccgGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTc                                                                                                                      <  7:115491/149‑1 (MQ=255)                              ggCTGCGCTTGCAAGGCTGGGAAGAACTTCGCGAACGCATTGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCTGGCGCCTGGCCAAGTGCGATGGCCGGTTAGCCGAGCAGCATATCCAGCAGGCGCGGCAg                                                                                                                    <  8:271672/149‑1 (MQ=255)                                    gcTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATg                                                                                                              <  8:112624/149‑1 (MQ=255)                                       tGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGt                                                                                                            <  2:228019/148‑1 (MQ=255)                                        gCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGga                                                                                                                  >  1:313154/1‑141 (MQ=255)                                        gCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGga                                                                                                                  <  2:313154/141‑1 (MQ=255)                                             gCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATg                                                                                                              >  6:196904/1‑140 (MQ=255)                                             gCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATg                                                                                                              <  5:196904/140‑1 (MQ=255)                                                 ggAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGAc                                                                                                  <  1:66521/148‑1 (MQ=255)                                                    aGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTgg                                                                                              <  5:133911/149‑1 (MQ=255)                                                         tGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAg                                                                                         <  3:111785/149‑1 (MQ=255)                                                            gcgAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCa                                                                                      <  7:284104/149‑1 (MQ=255)                                                              gAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGga                                                                                                                  <  3:226176/119‑1 (MQ=255)                                                              gAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGga                                                                                                                  >  4:226176/1‑119 (MQ=255)                                                                aCGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGccc                                                                                  <  2:39935/149‑1 (MQ=255)                                                                    cTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAg                                                                                         >  3:273819/1‑138 (MQ=255)                                                                    cTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAg                                                                                         <  4:273819/138‑1 (MQ=255)                                                                    cTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGtt                                                                              >  4:19427/1‑149 (MQ=255)                                                                       ggtgggCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTgcg                                                                           >  7:265389/1‑149 (MQ=255)                                                                                ccTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCaa                                                                  >  3:239364/1‑149 (MQ=255)                                                                                 cTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAAt                                                                 >  3:234380/1‑149 (MQ=255)                                                                                      ttACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGtt                                                            <  3:19427/149‑1 (MQ=255)                                                                                            gacgacgaGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCg                                                      <  4:123006/149‑1 (MQ=255)                                                                                            gacgacgaGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCg                                                      >  7:156788/1‑149 (MQ=255)                                                                                                    gttgttgttCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAgg                                              >  5:145399/1‑149 (MQ=255)                                                                                                           ttCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccgagcatcacgaacaacaactcgtcgtcgcgtaatgcagggcgcccacccaggcgttcgcgcatgtcttcccagccttgcaagcgcagccggcggtcgatg                                           <  6:234212‑M2/145‑103 (MQ=255)                                                                                                           ttCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccgagcatcacgaacaacaactcgtcgtcgcgtaatgcagggcgcccacccaggcgttcgcgcatgtcttcccagccttgcaagcgcagccggcggtcgatg                                           >  5:234212‑M2/1‑43 (MQ=255)                                                                                                           ttCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGc                                         >  7:106905/1‑147 (MQ=255)                                                                                                              gTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGccgagcatcacgaacaacaactcgtcgtcgcgtaatgcagggcgcccacccaggcgttcgcgcatgtcttcccagccttgcaagcgcagccggcggtcgatggcctgcc                                    <  5:62740‑M2/149‑110 (MQ=255)                                                                                                              gTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGa                                    >  6:198267/1‑149 (MQ=255)                                                                                                                gATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGAcc                                  >  6:220482/1‑149 (MQ=255)                                                                                                                 aTGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGAcc                                  <  5:220482/148‑1 (MQ=255)                                                                                                                       gggCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCAGCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTgg                           >  4:18363/1‑149 (MQ=255)                                                                                                                                gCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCATCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCt                  >  2:168100/1‑149 (MQ=255)                                                                                                                                    aGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTgcgg              <  8:225079/149‑1 (MQ=255)                                                                                                                                     gTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTgcggc             <  2:176253/149‑1 (MQ=255)                                                                                                                                         gATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTc                                                                                                                      <  6:219294/40‑1 (MQ=255)                                                                                                                                         gATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTc                                                                                                                      >  5:219294/1‑40 (MQ=255)                                                                                                                                         gATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTGCGGCGCAt         <  7:252962/149‑1 (MQ=255)                                                                                                                                             gCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTgcgcg                                                                         <  7:256472/81‑1 (MQ=255)                                                                                                                                             gCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTgcgcg                                                                         >  8:256472/1‑81 (MQ=255)                                                                                                                                                 ggTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTGCGGCGCAtcagtcag  >  8:84380/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                TGCGTTGCTTGGGCAGGCCATCGACCGCCGGCTGCGCTTGCAAGGCTGGGAAGACATGCGCGAACGCCTGGGTGGGCGCCCTGCATTACGCGACGACGAGTTGTTGTTCGTGATGCTCGGGCGCCTGGCCAAGTGCGATGGCCGGGTAGCCGAGCAGCATATCCAGCAGGCGCGTCAGGAGATGGTGCGCCTGGACCTGGCCGAGGCAGCCCGGTTGCGCGCCATCAATGCGTTCAACCGTGGCAAGGCGGGCAAGGACCGGCTTGGCGGGCACCTGCGGCGCATCAGTCAG  >  NC_002947/494314‑494605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.