New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 654740	49 (0.990)	4 (0.090)	4/234	NT	8.1%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	46 (1.020)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator

AGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGT  >  NC_002947/654630‑654906                                                                                                                                                 |                                                                                                                                      aGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgc                                                                                                                                   <  7:132520‑M2/149‑5 (MQ=255)      tttggggCGTTCGAGGGCGCGCTGTTACCACCACAGTGTGGCGCCCAATGCGATTCACACGTTCACAAGTAACAGCTTGTTGAAATTTTTCAGCTACTTCAGGCTCATATCTGCTATCTTCCTGCGTAGGGGAGAGGTAGGCGCCTGaa                                                                                                                              <  7:47625/146‑1 (MQ=255)      gTAGGGGCGTTCGAGGGCGCGCTGTGAGCACCACAGGGTGGCGCGCAAGGCGATACACACGGTCACCAGCATCAGCGTGTTGAATTTGGTCTGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaa                                                                                                                              >  8:182281‑M2/1‑140 (MQ=255)      gTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaa                                                                                                                              >  1:11157‑M2/1‑140 (MQ=255)      gTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaa                                                                                                                              >  2:50072‑M2/1‑140 (MQ=255)       tAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaag                                                                                                                             <  5:250352‑M2/149‑11 (MQ=255)           ggCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAt                                                                                                                         >  5:135447/1‑149 (MQ=255)            gCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAtt                                                                                                                        <  7:146287/149‑1 (MQ=255)                    gggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtttt                                                                                                                <  6:250352/149‑1 (MQ=255)                     ggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtttt                                                                                                                <  4:184125/148‑1 (MQ=255)                           cTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACgg                                                                                                         <  1:103073/149‑1 (MQ=255)                            tgtgACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACggg                                                                                                        >  1:247923/1‑149 (MQ=255)                               gACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGt                                                                                                      >  6:235031/1‑148 (MQ=255)                                 ccaccaCAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                                                   >  2:251136/1‑149 (MQ=255)                                  caccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                                                   >  6:186564/1‑148 (MQ=255)                                    ccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGAc                                                                                                >  8:91226/1‑149 (MQ=255)                                         gggTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAg                                                                                           <  6:135447/149‑1 (MQ=255)                                              gcgcCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGc                                                                                       <  2:203597/148‑1 (MQ=255)                                                gcCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTg                                                                                    <  1:314370/149‑1 (MQ=255)                                                      ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                                              <  2:247923/149‑1 (MQ=255)                                                      ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                                              <  8:132520/149‑1 (MQ=255)                                                          aTACACACGGTCACCAGCAACAGCGTGTCGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaa                                                                          <  5:186564/149‑1 (MQ=255)                                                              acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                                      <  7:91226/149‑1 (MQ=255)                                                                acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGt                                                                    >  5:288049/1‑149 (MQ=255)                                                                  ggTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTgg                                                                  >  3:28914/1‑149 (MQ=255)                                                                      aCCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                                                >  1:129236/1‑147 (MQ=255)                                                                        cAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGt                                                            >  5:207773/1‑149 (MQ=255)                                                                        cAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGt                                                            >  1:95708/1‑149 (MQ=255)                                                                            aaCAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTCACGGGGTGATGACGCCAGGGGCTTGCTGACAGAAAAAAAGTGGAACAGAGcat                                                        >  7:270781/1‑147 (MQ=255)                                                                               aGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGGTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCATCCa                                                     >  7:216544/1‑149 (MQ=255)                                                                                      tGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGTGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTg                                                                   <  2:140971/128‑1 (MQ=255)                                                                                      tGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGAGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTg                                                                   >  1:140971/1‑128 (MQ=255)                                                                                       gAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCt                                                                                      >  8:141966/1‑108 (MQ=255)                                                                                       gAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCt                                                                                      <  7:141966/108‑1 (MQ=255)                                                                                       gAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGCTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGt‑gtg                                            >  2:175635/1‑149 (MQ=255)                                                                                          aTTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGcc                                         >  4:34174/1‑149 (MQ=255)                                                                                               tCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCAc                                    >  1:226237/1‑149 (MQ=255)                                                                                                   ccACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGc                                <  2:95708/149‑1 (MQ=255)                                                                                                   ccACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGc                                <  6:207773/149‑1 (MQ=255)                                                                                                     aCTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgcccccctgtggtggtcacagcgcgccctcgaacgcccc                                <  1:204152‑M2/148‑104 (MQ=255)                                                                                                       ttCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctac                             <  8:5432‑M2/149‑107 (MQ=255)                                                                                                       ttCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑CTGGCCGGCACTGGCctct                            >  8:280335/1‑149 (MQ=255)                                                                                                         cAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctac                             <  1:265819‑M2/147‑107 (MQ=255)                                                                                                              gcATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCggg                     >  1:182808/1‑149 (MQ=255)                                                                                                                   gCCGCGAACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctaccagctgatggag                 >  2:265819‑M2/1‑31 (MQ=255)                                                                                                                   gCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTCGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGc                <  5:235031/149‑1 (MQ=255)                                                                                                                       cgAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGc            <  7:142834/149‑1 (MQ=255)                                                                                                                          aCTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTcc         <  3:34174/149‑1 (MQ=255)                                                                                                                            ttCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCAAGCCCGcga          <  5:44308/146‑3 (MQ=255)                                                                                                                            ttCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCAAGCCCGcga          >  6:44308/1‑144 (MQ=255)                                                                                                                              tcTGCGCAGGGGAGAGGTAGGTGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGGCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCcac      <  8:270781/147‑1 (MQ=255)                                                                                                                              ccTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGCT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCca       >  7:55062/1‑147 (MQ=255)                                                                                                                              ccTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATGGGTGGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCca       >  1:263718/1‑148 (MQ=255)                                                                                                                               cTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAg    <  2:182808/149‑1 (MQ=255)                                                                                                                                tGCGCAGGGCAGAGGTAGGCGCCTGAAGATATTCCGATTTTGTCACGGCGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCAATGGT‑GTGGCCGGCACTTGCCTCTTCGCGGGCTTGCACGCTCCCACAgc   >  8:147135/1‑148 (MQ=255)                                                                                                                                  cgcAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGt  <  7:147135/148‑1 (MQ=255)                                                                                                                                       gggAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCca       >  7:61572/1‑138 (MQ=255)                                                                                                                                       gggAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCca       <  8:61572/138‑1 (MQ=255)                                                                                                                                              gTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCAGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAgg   >  7:107179/1‑135 (MQ=255)                                                                                                                                              gTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCAGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAgg   <  8:107179/135‑1 (MQ=255)                                                                                                                                                 ggCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGTCCTCTTCGCGGGCTTGCCCGc            <  6:33048/123‑1 (MQ=255)                                                                                                                                                 ggCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGACCTCTTCGCGGGCTTGCCCGc            >  5:33048/1‑123 (MQ=255)                                                                                                                                                 |                                                                                                                                      AGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGT‑GTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGT  >  NC_002947/654630‑654906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.