| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1499458 | 38 (0.770) | 11 (0.230) | 7/252 | NT | 24.3% | intergenic (+35/‑129) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499495 | 31 (0.640) | intergenic (+72/‑92) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
GACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCA‑CG‑CCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCC > NC_002947/1499355‑1499628 | gACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgg > 8:23408‑M2/1‑141 (MQ=255) aCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCCCGAAACAGGCGCCGCGGGGCATGGCACCCGCGTTGCCGGTGttcgcgggcacg < 2:204907‑M2/149‑13 (MQ=255) cccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctccc > 1:204907‑M2/1‑128 (MQ=255) ccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAGAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctccc < 1:252945‑M2/149‑22 (MQ=255) gAGGCGGCCATTCAGAGCCGGAACGACGCCTTGCCACCACAGCAGCACTGAGGCTGCCA‑AACGGGGGGCGCGGCCGGGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccacaga > 1:233861‑M2/1‑123 (MQ=255) aTGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcaggcccgctcccacaga > 8:54798‑M2/1‑122 (MQ=255) aTGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccacaga > 1:231011‑M2/1‑122 (MQ=255) cGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccacagactga > 8:204104‑M2/1‑119 (MQ=255) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCgg < 8:50957/149‑1 (MQ=21) cTGAACGAAGCCTTGGCACCACAGCAGGAATGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCCCGAAAAACGCGCCCCGGTTCATTGCACCGGATTTGCCGGTGTTAGAGGGCA‑CGCCCGCGCCCAC‑ATCCTGAATGCCATTTATCgg > 8:157735/1‑149 (MQ=255) tGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCGTTGCCGGTGTTAGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCggg > 2:241822/1‑149 (MQ=25) tGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCCTGCCCCCGAAACAGGCGCCGCCGTGCCTGGCCCCCGCGTTGGCGGTGTTAGCGGGCACCC‑CCCCGCCCAC‑AGCCGGATTGCCATTAACCggg > 7:276185/1‑149 (MQ=255) agcagGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTTCCCGCGAAACAAGCGCCGCCGTGCAAGGCACCCGCTTTGGCCGTGTTAGCGGGCACCC‑CCCCGCCCCC‑CGCCAGAATTCCAATTAGCGGGCCGATCGCGAAAGTggccggc > 6:283306/1‑143 (MQ=255) tGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt > 1:95204/1‑149 (MQ=21) ggAGGCTGCCT‑ATCGGTGGGTGCGGGGGGGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttttt < 7:157735/147‑1 (MQ=21) aGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCACTTGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 1:237935/148‑1 (MQ=21) ggCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt < 5:283306/149‑1 (MQ=21) ggCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt < 2:252945/149‑1 (MQ=21) a‑aaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCCCGGTGCATGGCACCGGCGTTGCCCGTGTTAGCGGGCC‑CGCCCCCTCCCAC‑AGACTGATTTCCATTAAGCCGGCCGATCGCTACAGTGACGGCCCGGTTTTTGTTTCCTccc > 6:246906/1‑147 (MQ=18) tGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGa < 5:246906/149‑1 (MQ=21) gggAGCGGGCGTGCCCGGTAAACAGGCGCGGCTGTGCTTGGCACCGGCTTTGCCGTTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa < 5:191783/149‑1 (MQ=25) ggAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 3:284854/149‑1 (MQ=25) taGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 8:19517/148‑1 (MQ=25) aGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTAGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa > 3:271784/1‑149 (MQ=25) gcgggcggGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTTTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 7:121726/149‑1 (MQ=25) gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 7:71391/149‑1 (MQ=25) cGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGc > 6:238461/1‑99 (MQ=14) cGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGc > 6:242733/1‑99 (MQ=14) gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc < 5:135106/149‑1 (MQ=25) gccccgcGAAACCGGCGCCGCGGGGCATGGCACCGGCTTTGCCGGTGtgcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttg > 6:173830‑M2/3‑47 (MQ=255) gCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 8:160113/1‑149 (MQ=37) cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctccccccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttg < 5:173830‑M2/147‑103 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgt < 6:317540‑M2/147‑104 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgt > 5:317540‑M2/1‑44 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 7:13180/1‑147 (MQ=37) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 2:95204/149‑1 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg > 4:170815/1‑148 (MQ=37) gAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAc > 5:308662/1‑149 (MQ=37) ccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGc < 3:170815/149‑1 (MQ=37) gCATGGCACCGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGTCCGGTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCt > 1:134568/1‑148 (MQ=37) caccGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 6:60238/111‑1 (MQ=37) caccGGCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa > 5:60238/4‑114 (MQ=37) ggCTTTGCCGGTGTTCGCGGGCA‑CGCCCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTccc > 6:44884/1‑148 (MQ=39) | GACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCA‑AACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCA‑CG‑CCGCTCCCAC‑AGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCC > NC_002947/1499355‑1499628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |