New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1790414 = | 52 (1.050) | 3 (0.060) | 3/244 | NT | 5.9% | coding (344/1215 nt) | dxr | 1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase |
? | NC_002947 | 1790444 = | 47 (1.000) | coding (374/1215 nt) | dxr | 1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase |
TGCGTGCGAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAG > NC_002947/1790297‑1790587 | tgcgtgcgAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTc > 5:105687/1‑149 (MQ=255) cgtgcgAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCg < 6:105687/148‑1 (MQ=255) tgcgAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGagg > 8:270106/1‑149 (MQ=255) gcgAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGaggc < 3:307808/149‑1 (MQ=255) gtcgatcggcagcagcacggcacccttttgccgcaccgcctccatgaacagtgcgccggacatcacaagtgcttccttgttggccagcaacaccttcttgcctgcctcgaCTGCCGGCCTGCGCCCCACGCGGGCGGCAGTCGaggcag < 1:67743‑M1/39‑1 (MQ=255) tCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGaggcaggc > 8:51798/1‑148 (MQ=255) cTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGaggcaggc > 8:76527/1‑147 (MQ=255) tGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGaggcaggc > 8:220501/1‑146 (MQ=255) gCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaag > 1:88165/1‑147 (MQ=255) gCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaag < 3:254642/147‑1 (MQ=255) cTGCGGCCGGTTGCACCTCCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaagaag < 7:299244/149‑1 (MQ=255) cTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaagaag < 7:262188/149‑1 (MQ=255) ggCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCACAACGCTGGCGGCAGTCGAGGCAGGCAAGAAGgtgt > 6:180698/1‑149 (MQ=255) cGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGc < 3:245875/149‑1 (MQ=255) ttGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTgg < 1:22246/149‑1 (MQ=255) ttGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTgg > 6:58237/1‑149 (MQ=255) gCACCACCGAGGTGCTGGAAGGTTAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCTCCCCACGCTGGCTGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGc < 5:180698/148‑1 (MQ=255) accGTGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCcaacaa < 3:137988/149‑1 (MQ=255) accGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCcaac > 6:171681/1‑147 (MQ=255) cGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAg > 4:111723/1‑148 (MQ=255) ccgcaccgcctccatgaacagtgcgccggacatcacaagtgcttccttgttggccagcaacaccttcttgcctgcctcgaCTGCCGGCCTGCGCCCCACTCTGGCGGCAGTCGa < 7:196367‑M1/34‑1 (MQ=255) ccgcaccgcctccatgaacagtgcgccggacatcacaagtgcttccttgttggccagcaacaccttcttgcctgcctcgaCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGa > 8:196367‑M1/81‑114 (MQ=255) gCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCAc > 4:213745/1‑149 (MQ=255) cTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaagaa > 3:82629/1‑122 (MQ=255) cTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCaagaa < 4:82629/122‑1 (MQ=255) gAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTtgt < 3:111723/149‑1 (MQ=255) aaGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGc > 1:308532/1‑130 (MQ=255) aaGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGc < 2:308532/130‑1 (MQ=255) tGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGt > 3:19324/1‑149 (MQ=255) aGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTcc > 7:163729/1‑149 (MQ=255) tGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGaa < 3:177588/123‑1 (MQ=255) tGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGaa > 4:177588/1‑123 (MQ=255) tGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGtt > 8:96303/1‑149 (MQ=255) ggCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAgg < 7:220501/149‑1 (MQ=255) gCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGc > 3:310687/1‑149 (MQ=255) tCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGt > 1:116635/1‑149 (MQ=255) gCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCa < 7:51798/149‑1 (MQ=255) aaGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCaaa < 5:58237/147‑1 (MQ=255) aggggttGCAGTGCTGGCAGCCATTTTGGGTGCTTGCGGCCGGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAgg < 2:88165/143‑1 (MQ=255) aGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAgg < 7:96303/149‑1 (MQ=255) aGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGtgc > 7:242681/1‑149 (MQ=255) gTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGtgct < 3:213745/149‑1 (MQ=255) aTGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGtgctgc < 8:163729/148‑1 (MQ=255) gCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGcc > 7:107288/1‑149 (MQ=255) ccATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCg < 4:162550/121‑1 (MQ=255) ccATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCg > 3:162550/1‑121 (MQ=255) ctgcctcgactgccgcccgcgtggggcgcaggccggcagTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGAc < 1:67743‑M2/110‑1 (MQ=255) tCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGc < 2:116635/149‑1 (MQ=255) tCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGc < 8:242681/149‑1 (MQ=255) tcgactgccgccagcgtggggcgcaggccggcagTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCgg > 8:196367‑M2/35‑114 (MQ=255) tcgactgccgccagagtggggcgcaggccggcagTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCgg < 7:196367‑M2/80‑1 (MQ=255) gTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGaa > 6:275574/1‑149 (MQ=255) GCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACaa < 8:40877‑M1/149‑1 (MQ=255) ccGGCATGCGCCCCACGATGGCGGCAGTCGAGTCAGGCAAGTAGTTTTTGCGGGGCATCTAGGATGGACTTGTGATGTCCGGCGCTGTGTTCATGGAGGGGTTGCGTCAATAGGGTGGGGTGCTGGTTAGGATCGAGAGCGatctcttg < 8:107288/149‑8 (MQ=255) CGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACg < 6:226757‑M1/149‑1 (MQ=255) cccACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCa < 5:171681/149‑1 (MQ=255) cGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGc < 7:270106/149‑1 (MQ=255) ggcagTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAg < 7:76527‑M2/144‑1 (MQ=255) | TGCGTGCGAGTCTGGCTGCGGCCGGTTGCACCACCGAGGTGCTGGAAGGTGAGGCCGGGCTTTGCCAAGTGGCGTCGGCCGCTGAAGTGGATGCAGTGATGGCAGCCATTGTCGGTGCTGCCGGCCTGCGCCCCACGCTGGCGGCAGTCGAGGCAGGCAAGAAGGTGTTGCTGGCCAACAAGGAAGCACTTGTGATGTCCGGCGCACTGTTCATGGAGGCGGTGCGGCAAAAGGGTGCCGTGCTGCTGCCGATCGACAGCGAACACAACGCTATCTTCCAGTGCATGCCAG > NC_002947/1790297‑1790587 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |