New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1935398 =	57 (1.150)	4 (0.080)	4/246	NT	8.2%	coding (663/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	1935456 =	35 (0.740)					coding (721/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase

GGGCCGGGCGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCA  >  NC_002947/1935311‑1935595                                                                                                                                                  |                                                                                                                                            gggccgggcGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCaa                                                                                                                                           >  2:46016/1‑148 (MQ=255)    ggcctcttcgctttccccggggaaatccgtcagcggcgggtggatgaccagccgatagccgctgccatcctccagccgcttttgGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGc                                                                                                                                       >  4:222690‑M1/85‑149 (MQ=255)     gcctcttcgctttccccggggaaatccgtcagcggcgggtggatgaccagccgatagccgctgccatcctccagccgcttttgGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCg                                                                                                                                      >  5:37521‑M1/84‑149 (MQ=255)     cgggcGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCg                                                                                                                                      <  1:4895/149‑1 (MQ=255)     cgggcGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCg                                                                                                                                      <  8:195687/149‑1 (MQ=255)         cGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTg                                                                                                                                  <  8:81752/149‑1 (MQ=255)                gTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTgga                                                                                                                                <  7:133094/144‑1 (MQ=255)                gTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTgga                                                                                                                                <  3:265914/144‑1 (MQ=255)                gTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATg                                                                                                                           <  1:179826/149‑1 (MQ=255)                      aCCGGACCAGGACTACCGCGCCAAGCAGAGCATATTCGTACCCTTGTTTGGCATCCCCGCGGCGACGGTGAACGCTACCACCAAGTTCGCCCGGTTGGGGAAGGAGAAGCTGATTCCGTACACCCAAAAGCGGCTGGAGGATGGCAGCg                                                                                                                     >  8:83746/1‑149 (MQ=255)                               ggACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGCCCGCTACCACCACGTTCGCCCGGGTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGc                                                                                                            >  8:56318/1‑149 (MQ=255)                                  cTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTgg                                                                                                         <  2:23413/149‑1 (MQ=255)                                         gcCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCa                                                                                                  >  4:259784/1‑149 (MQ=255)                                          ccAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCAc                                                                                                 <  6:304467/149‑1 (MQ=255)                                          ccAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCAc                                                                                                 >  5:304467/1‑149 (MQ=255)                                              gCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACccgc                                                                                             >  3:54307/1‑149 (MQ=255)                                              gCAGAGCATCTTCGTACCGATGTTTGGCATCCCCGCGGCCACGGTGCCCGCTACCACCAAGTTCGCCCGGATGGGGAAGGCGCAGGTGATTCCGTGCACCCAAAACCGGCAGGAGGATGCCACCCGCTATCGCCTGGTCAACCAccccc                                                                                             >  4:21356/1‑147 (MQ=255)                                                    catcatCGTACCGTTGTTTGGCATCCCAGCGGCGACGGTGACAGCTACCACCAAGTTCGCCCGGATGGGGAAGGCGCAGGTGATTCCGTACACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGa                                                                                       >  5:103385/1‑149 (MQ=255)                                                     aTCTTCGTTCCGTTGTTTGGCATCCCGGCGGGGACGGTGACCGCTTCCACCATGTTCGCCCGGTTGGGGTAGGCGCAGGGGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGa                                                                                       <  3:21356/148‑1 (MQ=255)                                                        ttCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGc                                                                                                                      >  7:5122/1‑114 (MQ=255)                                                        ttCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGc                                                                                                                      <  8:5122/114‑1 (MQ=255)                                                              ccGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGAc                                                                                      <  4:224153/140‑1 (MQ=255)                                                              ccGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGAc                                                                                      >  3:224153/1‑140 (MQ=255)                                                                   gttTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCggg                                                                         <  4:54307/148‑1 (MQ=255)                                                                    tttGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCgggg                                                                        >  4:241621/1‑148 (MQ=255)                                                                       ggCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGaaa                                                                     <  2:170807/148‑1 (MQ=255)                                                                       ggCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGaaa                                                                     <  2:190206/148‑1 (MQ=255)                                                                         cATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCg                                                                  <  7:83746/149‑1 (MQ=255)                                                                           tCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCg                                                                  >  6:149149/1‑147 (MQ=255)                                                                             cccGCGGCGAAGGTGACCGCTACCACCAAGTTCGCCCGCTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTCGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAag                                                               <  5:90433/148‑1 (MQ=255)                                                                              ccGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTg                                                                                                          >  7:161648/1‑104 (MQ=255)                                                                              ccGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTg                                                                                                          <  8:161648/104‑1 (MQ=255)                                                                                gcggcgACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGc                                                           <  1:46016/149‑1 (MQ=255)                                                                                cgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGc                                                           >  5:37521‑M2/67‑149 (MQ=255)                                                                                 gcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGcc                                                          >  4:222690‑M2/66‑149 (MQ=255)                                                                                            ACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTcccc                                                                            >  7:292669‑M1/1‑120 (MQ=255)                                                                                            ACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGACGATGGCAGCGGCTATCGGCAGGTCATCCACCCGCCGCAGACGGATTGcccc                                                                            <  8:292669‑M1/120‑1 (MQ=255)                                                                                              cggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCa                                             <  6:37521‑M2/97‑1 (MQ=255)                                                                                                cTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATc                                           <  3:241621/149‑1 (MQ=255)                                                                                                         aGTTCGCCCGGTTGGGGATGGCGCAGGTGATTCCGTTGAGCCAAAAGCGGCTGGTTGATGGCAGCGGCTATCTGCTGGTCATCCAGGCTCCGCTGACGGATTTCCGCGGGGAAATCGAAGAGGCCGATTGCCTGCGCATCAACCAAttg                                  <  5:220024/149‑3 (MQ=255)                                                                                                          cgccttccccaaccgggcgaacttggtggtagcggtcaccCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg                                  <  3:222690‑M2/108‑1 (MQ=255)                                                                                                           ttCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGt                                <  4:100317/149‑1 (MQ=255)                                                                                                              gCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTc                               >  4:207678/1‑147 (MQ=255)                                                                                                                               gcAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGt            <  7:56318/149‑1 (MQ=255)                                                                                                                                         ccGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGc   <  2:188871/148‑1 (MQ=255)                                                                                                                                          ctttctccCATAAGCGGCTGGATGATTGCAGCGGCTATCGTCTGGTCATCCACCCGCCGCTGACTGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCa  <  6:103385‑M2/140‑1 (MQ=255)                                                                                                                                           gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCa  >  2:132276/1‑147 (MQ=255)                                                                                                                                           gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCa  <  1:132276/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            GGGCCGGGCGATCTGGTACGCACCGGACCAGGACTACGGCGCCAAGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCA  >  NC_002947/1935311‑1935595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.