New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1936644	55 (1.110)	4 (0.090)	3/242	NT	8.2%	coding (946/1149 nt)	PP_1736	hypothetical protein
	?	NC_002947	= 1936722	37 (0.790)					coding (1024/1149 nt)	PP_1736	hypothetical protein

GCACCTGGATGCCCGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTT  >  NC_002947/1936574‑1936868                                                                                                                                                     |                                                                                                                                                   gcACCTGGATGCCCGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCa                                                                                                                                                    <  4:132415/149‑1 (MQ=255)        gATGCCCGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCAccagcgg                                                                                                                                             <  6:297801‑M2/149‑8 (MQ=255)            cccGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAgcggggc                                                                                                                                          <  6:8244/148‑1 (MQ=255)             ccGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAgcggggcgg                                                                                                                                        >  8:201505/1‑149 (MQ=255)               ggCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGcggggcgggg                                                                                                                                      >  2:315597/1‑149 (MQ=255)                    cTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAgcggggcg                                                                                                                                         >  5:92/1‑141 (MQ=255)                    cTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAgcggggcg                                                                                                                                         <  6:92/141‑1 (MQ=255)                    cTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGtt                                                                                                                                 <  1:110929/149‑1 (MQ=255)                    cTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGtt                                                                                                                                 <  5:297801/149‑1 (MQ=255)                      ggggCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGtt                                                                                                                                 >  6:75326/1‑147 (MQ=255)                      ggcgCTGGCACCGAGCGACGTGCTGGGGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCGCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGa                                                                                                                               <  4:83953/146‑1 (MQ=255)                               aCCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGc                                                                                                                      >  4:167578/1‑149 (MQ=255)                                ccGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGACTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCt                                                                                                                     >  7:228102/1‑149 (MQ=255)                                       aCGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGttt                                                                                                                 >  2:274516/1‑146 (MQ=255)                                       aCGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGttt                                                                                                                 <  1:274516/146‑1 (MQ=255)                                       aCGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAg                                                                                                              >  4:283263/1‑149 (MQ=255)                                       aCGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAg                                                                                                              <  7:201505/149‑1 (MQ=255)                                       aCGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAg                                                                                                              <  1:315597/149‑1 (MQ=255)                                               gtggtggCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTa                                                                                                      <  5:75326/149‑1 (MQ=255)                                                  gtggCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTg                                                                                                   <  3:167578/149‑1 (MQ=255)                                                  gtggCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTg                                                                                                   >  1:71196/1‑149 (MQ=255)                                                     gcgcCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCa                                                                                                 <  1:89769/148‑1 (MQ=255)                                                       gcCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAg                                                                                                                              <  6:210013/117‑1 (MQ=255)                                                       gcCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAg                                                                                                                              >  5:210013/1‑117 (MQ=255)                                                       gcCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGt                                                                                               >  4:262168/1‑148 (MQ=255)                                                             ccaggcGGTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGt                                                                                               <  1:124219/142‑1 (MQ=255)                                                              cagccGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGAt                                                                                       <  3:262168/149‑1 (MQ=255)                                                                gccGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCAccagcggctggctgggcgccaccaccagcacgtcgatcggtgccagccccaggcgccgggcat                                                                                     <  1:128474‑M2/149‑64 (MQ=255)                                                                 ccGGTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGa                                                                                    <  5:127794/149‑1 (MQ=255)                                                                    cTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCAccagcggctggctgggcgccaccaccagcacgtcgatcggtgccagccccaggcgccgggcatccag                                                                                 <  7:281993‑M2/149‑68 (MQ=255)                                                                       gATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTggg                                                                              <  2:314381/149‑1 (MQ=255)                                                                         tGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGgc                                                                            >  4:105656/1‑149 (MQ=255)                                                                               tGCCGCTCGGCACCGGCGCGAGGTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCTGTGAACTGATCGAGTTGGGGCGCAAg                                                                       <  2:221604/148‑1 (MQ=255)                                                                                       ggCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGGTGTTCCGTGGGCCGGGGGCAACGCTCACCAGCGTGGCGGGGGTGTTGATCTATTTGCTTTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATTCCTTg                                                              <  7:18728/149‑1 (MQ=255)                                                                                        gCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCa                                                                                                 <  5:119143/113‑1 (MQ=255)                                                                                        gCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCa                                                                                                 >  6:119143/1‑113 (MQ=255)                                                                                         cACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGc                                                            <  3:283263/149‑1 (MQ=255)                                                                                               cgcgAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCaagaa                                                      <  3:43976/149‑1 (MQ=255)                                                                                                     ttGCCGGCGGCGTTGCGCCTATTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAgcgc                                                  >  3:242085/1‑147 (MQ=255)                                                                                                        ccGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCt                                             >  5:183130/1‑149 (MQ=255)                                                                                                          ggcggcGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCttt                                           <  6:183130/149‑1 (MQ=255)                                                                                                           gcggcgTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTg                                          <  5:62447/149‑1 (MQ=255)                                                                                                               cgTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGaa                                      <  3:105656/149‑1 (MQ=255)                                                                                                                    cgcCTGTTTTTACGTGGGCCGGGGGCAACGCGCAccagcggctggctgggcgccaccaccagcacgtcgatcggtgccagccccaggcgccgggcatccaggtgcgccggcaacagcccgctcaagtggttgaggcgctgcagcagttc                                 >  2:128474‑M2/1‑34 (MQ=255)                                                                                                                    cgcCTGTTTTTACGTGGGCCGGGGGCAACGCGCAccagcggctggctgggcgccaccaccagcacgtcgatcggtgccagccccaggcgccgggcatccaggtgcgccggcaacagcccgctcaagtggttgaggcgctgcagcagttc                                 >  8:281993‑M2/1‑34 (MQ=255)                                                                                                                               aCGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGa                       <  2:71196/148‑1 (MQ=255)                                                                                                                                                cgcgCACCAGCGGGGCGGGCTAGCTGAGCTATTTGCTGTTTGACGCCAGCTATAGCAGTGAACTGATCGTGTTCGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGCGATTTGAGGTTGCCTTTGCGGGccc     <  8:144757/149‑1 (MQ=255)                                                                                                                                                 gcgcACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCt    >  2:136904/1‑149 (MQ=255)                                                                                                                                                   gcACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCttt  >  1:192099/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCACCTGGATGCCCGGCGCCTGGGGCTGGCACCGATCGACGTGCTGGTGGTGGCGCCCAGCCAGCCGCTGGATGAGATTGCCGCTCGGCACCGGCGCGAGTTGCCGGCGGCGTTGCGCCTGTTTTTACGTGGGCCGGGGGCAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTT  >  NC_002947/1936574‑1936868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.