New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3874929 | 38 (0.770) | 4 (0.090) | 3/240 | NT | 10.9% | intergenic (‑22/‑80) | ltg/xcpT | lytic transglycosylase/type II secretion pathway protein XcpT |
? | NC_002947 | = 3874973 | 30 (0.650) | intergenic (‑66/‑36) | ltg/xcpT | lytic transglycosylase/type II secretion pathway protein XcpT |
AGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGTTTCACCATGCAGCGCAGAACCAA > NC_002947/3874841‑3875109 | agaTGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACt > 2:216469/1‑149 (MQ=255) aTCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACtgt < 1:87539/141‑1 (MQ=255) aTCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACtgt > 2:87539/1‑141 (MQ=255) gcagcaCCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCAGAGGACAGTCACCACGACGCAAGCACtgtgaagc > 2:267154/1‑132 (MQ=255) ccTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGgcg > 4:5475/1‑148 (MQ=255) ccgccAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCaa < 1:293056/147‑1 (MQ=255) ccgccAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCaa < 4:79399/147‑1 (MQ=255) agccagATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAgg < 6:21040/144‑1 (MQ=255) agccagATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAgg > 5:21040/1‑144 (MQ=255) gccagATCAACCCGATAATGAGGCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGGGGGGGAAATGCCCCGGAAAACCCGAGGACCGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGa < 5:175072/149‑1 (MQ=255) cagATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTTTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAgg < 1:216469/149‑1 (MQ=255) gTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTg > 8:289178/1‑149 (MQ=255) tCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATACCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTg > 4:110490/1‑148 (MQ=255) cGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTc > 1:121985/1‑97 (MQ=255) cGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTc < 2:121985/97‑1 (MQ=255) cGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATgg < 8:42500/149‑1 (MQ=255) aTGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGc < 3:267396/149‑1 (MQ=255) cGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGt > 8:30185/1‑149 (MQ=255) ccTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCCCCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGc < 6:204529/149‑1 (MQ=255) ccTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCAccacgacgaagaggcgaccggcatgcgtggactcattatcggtttgatctggctggcggcaggtgctgcccaggccgatgtgtacatctc < 3:146480‑M2/148‑91 (MQ=255) ccTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCAccacgacgaagaggcgaccggcatgcgtggactcattatcggtttgatctggctggcggcaggtgctg > 2:97108‑M2/1‑58 (MQ=255) ccTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCAccacgacgaagaggcgaccggcatgcgtggactcattatcggtttgatctggctggcggcaggtgctg < 1:97108‑M2/126‑69 (MQ=255) ccTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGc > 3:82254/1‑149 (MQ=255) ctctTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCt > 8:243975/1‑149 (MQ=255) cgtcgtGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTc < 3:5475/148‑1 (MQ=255) cccGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTg > 1:43711/1‑149 (MQ=255) cGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGa < 1:248512/149‑1 (MQ=255) aTGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAgg < 2:43711/149‑1 (MQ=255) ggAAATGCCCCGGAAAACCCGAGGACAGTCAccacgacgaagaggcgaccggcatgcgtggactcattatcggtttgatctggctggcggcaggtgctgcccaggccgatgtgtacatctcaatcgatgccaagggtggctacgtactg > 4:146480‑M2/1‑31 (MQ=255) ggAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGTTTCAc > 1:303558/1‑149 (MQ=255) gAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGTTTCAcc < 4:82254/149‑1 (MQ=255) ccGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGGTTCAc < 4:200801/140‑1 (MQ=255) ccGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGGTTCAc > 3:200801/1‑140 (MQ=255) ccGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGTTTCACCATGCAGCGCAGaaccaa > 7:214605/1‑149 (MQ=255) | AGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGGGGGAAATGCCCCGGAAAACCCGAGGACAGTCACCACGACGCAAGCACTGTGCCGCTTCCTGTGCCGCATGGCGCAAGGCCCCGAGGCAGACGTGCACGGCTGTTGCATGGTGCATGTCAACGCTTGTCCCCATGCAGTGGAGGGTTTCACCATGCAGCGCAGAACCAA > NC_002947/3874841‑3875109 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |