New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4968256 =	47 (0.950)	4 (0.090)	4/240	NT	8.9%	coding (1987/2064 nt)	fliC	flagellin
	?	NC_002947	4968293 =	38 (0.820)					coding (1950/2064 nt)	fliC	flagellin

CCGCACCCTTTCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCATGGCACCATCCAGAACCTG  >  NC_002947/4968146‑4968439                                                                                                                                                    |                                                                                                                                                    ccGCACCCTTTCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAg                                                                                                                                                     <  1:212287/148‑1 (MQ=255)  gcgttcccagctgggtgcagtgcagaaccgtttcgatagcactgtcgctaacctgcagtcgatctcggaaaactccaccgcagcccgtagtcgtatccaggatgccgacTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTc                                                                                                                                                   >  6:3912‑M1/110‑149 (MQ=255)        ccagctgggtgcagtgcagaaccgtttcgatagcactgtcgctaacctgcagtcgatctcggaaaactccaccgcagcccgtagtcgtatccaggatgccgacTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCg                                                                                                                                                  <  1:2097‑M1/41‑1 (MQ=255)        ccagctgggtgcagtgcagaaccgtttcgatagcactgtcgctaacctgcagtcgatctcggaaaactccaccgcagcccgtagtcgtatccaggatgccgacTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCg                                                                                                                                                  >  2:2097‑M1/104‑144 (MQ=255)        cTTTCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATc                                                                                                                                             <  1:192433/149‑1 (MQ=255)           tCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCt                                                                                                                                           <  8:58032/148‑1 (MQ=255)           tCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCt                                                                                                                                           <  3:263586/148‑1 (MQ=255)               gATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATa                                                                                                                                      <  8:28228/149‑1 (MQ=255)                   catcaCAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGa                                                                                                                                   <  2:218199/148‑1 (MQ=255)                    atcaCAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGa                                                                                                                                        <  1:81914/142‑1 (MQ=255)                    atcaCAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGa                                                                                                                                        >  2:81914/1‑142 (MQ=255)                            aTCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTg                                                                                                                        >  2:79564/1‑149 (MQ=255)                                aaTTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGt                                                                                                                    >  7:173758/1‑149 (MQ=255)                                        gAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGtttt                                                                                                            >  6:2669/1‑149 (MQ=255)                                        gAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGtttt                                                                                                            >  2:257229/1‑149 (MQ=255)                                        gAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCATGGATACGAC‑TACGGGCTGCGGTGGAGtttt                                                                                                            >  7:299434/1‑149 (MQ=255)                                               ttCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTcc                                                                                                          >  3:170158/1‑144 (MQ=255)                                                 cAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTcc                                                                                                          <  1:88227/142‑1 (MQ=255)                                                 cAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTcc                                                                                                          >  2:88227/1‑142 (MQ=255)                                                    tACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACggg                                                                                                                           >  7:49302/1‑122 (MQ=255)                                                    tACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACggg                                                                                                                           <  8:49302/122‑1 (MQ=255)                                                      ccGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTg                                                                                               >  1:239658/1‑148 (MQ=255)                                                       cGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTg                                                                                               >  3:259990/1‑147 (MQ=255)                                                       cGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCa                                                                                             <  8:173758/149‑1 (MQ=255)                                                                  gCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACa                                                                                  <  4:259990/149‑1 (MQ=255)                                                                   cTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAg                                                                                 >  7:35859/1‑149 (MQ=255)                                                                      gTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGt                                                                                <  1:79564/147‑1 (MQ=255)                                                                         cGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTAt                                                                           >  5:131133/1‑149 (MQ=255)                                                                          gCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTAt                                                                           <  2:239658/148‑1 (MQ=255)                                                                           ccTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATc                                                                          >  6:113009/1‑148 (MQ=255)                                                                               cGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAAc                                                                     <  5:2669/149‑1 (MQ=255)                                                                                  cAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGATCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGT‑GAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGtt                                                                 >  3:121812/1‑149 (MQ=255)                                                                                   aGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGtt                                                                 <  5:161655/149‑1 (MQ=255)                                                                                                aaGCTTGCTGGAGGGTTTGCTGCTTGCTCAGGTCCGCATTTTAGGCATCAAAGTCGGCATCCTGGTTTCGTCTTCCGTTCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCAcc                                                     <  1:257229/149‑1 (MQ=255)                                                                                                  gCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGAAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAg                                                  >  3:150538/1‑149 (MQ=255)                                                                                                          cAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTctg                                                              <  5:267243/129‑1 (MQ=255)                                                                                                          cAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTctg                                                              >  6:267243/1‑129 (MQ=255)                                                                                                           cgactttgctgccgaaactgcggagctgagcaagcagcaaaGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTgg                                              <  1:2097‑M2/103‑1 (MQ=255)                                                                                                           cgactttgctgccgaaactgcggagctgagcaagcagcaaaGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTgg                                              >  2:2097‑M2/42‑144 (MQ=255)                                                                                                            gactttgctgccgaaactgcggagctgagcaagcagcaaaGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGc                                        >  6:3912‑M2/41‑149 (MQ=255)                                                                                                              gTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGAATCCTGGATACGAC‑TACTGGCTGCGGTGGAGTTTTCCGAGATCTACTGCAGGTTAGCGACAGTGCTATCGAATCGTTTCTGCACTGCACCCAGCTGGGAACTCTg                                      <  4:170158/149‑1 (MQ=255)                                                                                                               TTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     >  1:221336‑M1/1‑149 (MQ=255)                                                                                                               TTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     >  8:35859‑M1/1‑149 (MQ=255)                                                                                                               TTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     >  7:76737‑M1/1‑149 (MQ=255)                                                                                                               TTTGCGGCTTGCTCAGCTCCGCAGTTTCTTCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     >  8:299434‑M1/1‑149 (MQ=255)                                                                                                                  gctgccgaaactgcggagctgagcaagcagcaaaGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGa                                   <  5:3912‑M2/114‑1 (MQ=255)                                                                                                                  GCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACgg                                                                   >  5:247457‑M1/1‑116 (MQ=255)                                                                                                                  GCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACgg                                                                   <  6:247457‑M1/116‑1 (MQ=255)                                                                                                                    TGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTc                                <  5:307278‑M1/149‑1 (MQ=255)                                                                                                                      CTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGAt                                                                                                                                       <  5:203810‑M1/45‑1 (MQ=255)                                                                                                                      CTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGAt                                                                                                                                       >  6:203810‑M1/1‑45 (MQ=255)                                                                                                                           tCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     >  7:58870/1‑137 (MQ=255)                                                                                                                           tCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTgg                                     <  8:58870/137‑1 (MQ=255)                                                                                                                           tCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGAc                         >  2:106778/1‑149 (MQ=255)                                                                                                                                    cAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCATGGCa                <  6:131133/149‑1 (MQ=255)                                                                                                                                          cGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCATGGCACCATc           >  3:194923/1‑148 (MQ=255)                                                                                                                                                  aaGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCATGGCACCATCCAGAACCTg  <  6:307278‑M2/147‑1 (MQ=255)                                                                                                                                                  aaGTCGGCATCCTGGATACGAC‑TACGCGCTGCGGTGGAGTATTCCGAGATCGACTGCAGGTTAGCGACACTGCTATCGAAACGGTTCAGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCTTGGCACCATCCAGAAACTg  >  5:106199‑M2/3‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCGCACCCTTTCGCGATTCATCACAGAATCGAATTAGCCGAGCAGCTTCAGTACCGAAGATGGCAGCTGGTTCGCCTGCGACAGGATAGCGGTGGAAGCTTGCTGCAGGGTTTGCTGCTTGCTCAGCTCCGCAGTTTCGGCAGCAAAGTCGGCATCCTGGATACGAC‑TACGGGCTGCGGTGGAGTTTTCCGAGATCGACTGCAGGTTAGCGACAGTGCTATCGAAACGGTTCTGCACTGCACCCAGCTGGGAACGCTGGGAGTCCAGCGACTGCATGGCACCATCCAGAACCTG  >  NC_002947/4968146‑4968439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.