New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5870261 =	28 (0.570)	4 (0.100)	3/198	NT	17.5%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	16 (0.420)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator

CGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTG  >  NC_002947/5870206‑5870499                                                                                                                                                     |                                                                                                                                                  ctggCTTTTGGGGTAAATTCTGTTGTTGTTCTGAGTATTTTATGTTGTCTTTTCGGGCCTCTTCGCGGTTCAACCCGCTCCTACAACGGCCTGGGTCCAACCCCTGATGTGTGTACGTGGTTGTAGGGGGTTCACCCGCGAAGAGGCCg                                                                                                                                                   <  8:62976/147‑1 (MQ=25)                          tgggTCTGAGTATTTCATGTTGTCTGTGCGGGCCTCTTCGCGGGTGAACCCGCGCCTACAACGGCCGGGTTCCAACCCCATATGTGTGTACGGGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAgg                                                                                                                          <  3:224027/147‑1 (MQ=38)                                                               TCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAAcc                                                                                     <  7:167060‑M1/149‑1 (MQ=255)                                                                 GCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAAccc                                                                                    <  4:220301‑M1/148‑1 (MQ=255)                                                                          cccgctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                           >  4:144411‑M2/76‑148 (MQ=255)                                                                          CCCGCTCCTACAAGGGCCTGGGTCAAACCCATCATTTGTGTACGTGGTAGGAGCGGTTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttcttc                                                                          >  1:181415‑M1/1‑149 (MQ=255)                                                                          CCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                           <  6:93124‑M1/148‑1 (MQ=255)                                                                           CCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                           <  1:38238‑M1/147‑1 (MQ=255)                                                                           CCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                           <  7:166547‑M1/147‑1 (MQ=255)                                                                             gctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACCGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       >  6:97693‑M2/73‑149 (MQ=255)                                                                             gctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       <  1:314307‑M2/77‑1 (MQ=255)                                                                             gctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       >  2:314307‑M2/73‑149 (MQ=255)                                                                             GCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       >  3:220301‑M1/1‑149 (MQ=255)                                                                                 CTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGc                                                                     <  2:249756‑M1/147‑1 (MQ=255)                                                                                    CAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGtt                                                                <  1:208609‑M1/149‑1 (MQ=255)                                                                                        ggCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCTCAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCAGCGCCACCCCAAGGTTCTTCAGGGCCAgagaacg                                                            >  8:160400/1‑143 (MQ=255)                                                                                        ggCCTGGCTCCAACCCCATATGTGAGTACGTGGTAGGAGCGGGATCACCCGCGAAGAGGCCGCCACAAACAGCATCACCCTCACAGGGTTTTAATAGCCCCAGGCCCAATCATCCGCCCCAACCCAAGGTTCTTCAGGGCCa                                                                   <  7:160400/142‑1 (MQ=255)                                                                                         gCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGc                                                           <  8:167060/149‑1 (MQ=255)                                                                                         gCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGc                                                           <  2:208609/149‑1 (MQ=255)                                                                                             gggTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCa                                                                         <  3:101896/131‑1 (MQ=255)                                                                                             gggTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCa                                                                         >  4:101896/1‑131 (MQ=255)                                                                                                tCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtgt                                                    <  2:38238/149‑1 (MQ=255)                                                                                                tCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtgt                                                    <  1:249756/149‑1 (MQ=255)                                                                                                 ccAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtgtg                                                   >  7:70949/1‑149 (MQ=255)                                                                                                   aaCCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       <  7:100238/127‑1 (MQ=255)                                                                                                   aaCCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                       >  8:100238/1‑127 (MQ=255)                                                                                                   aaCCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTgg                                                  >  3:220822/1‑148 (MQ=255)                                                                                                        cAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAcc                                            >  3:211466/1‑149 (MQ=255)                                                                                                        cAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAcc                                            >  3:210338/1‑149 (MQ=255)                                                                                                                tgtACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                    <  8:166547/149‑1 (MQ=255)                                                                                                                            gagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtgt                                                    >  6:243508‑M2/26‑121 (MQ=255)                                                                                                                            gagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGATGCAGCGAGCtgt                                                    <  5:243508‑M2/96‑1 (MQ=255)                                                                                                                                gggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGcc                    >  3:300007‑M2/22‑149 (MQ=255)                                                                                                                                 ggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGc                                         >  8:138043‑M2/21‑127 (MQ=255)                                                                                                                                 ggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGc                                         <  7:138043‑M2/107‑1 (MQ=255)                                                                                                                                  gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATg                              <  6:189715‑M2/118‑1 (MQ=255)                                                                                                                                  gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATg                              >  5:189715‑M2/20‑137 (MQ=255)                                                                                                                                  gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                  <  4:210338‑M2/130‑1 (MQ=255)                                                                                                                                        ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCaa                        <  3:25403‑M2/124‑1 (MQ=255)                                                                                                                                        ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCaa                        >  4:25403‑M2/14‑137 (MQ=255)                                                                                                                                          gcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcag            >  6:234518‑M2/12‑147 (MQ=255)                                                                                                                                            gaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGt        <  5:93124‑M2/140‑1 (MQ=255)                                                                                                                                                  gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                  >  3:273735‑M2/4‑133 (MQ=255)                                                                                                                                                  gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                  <  4:273735‑M2/130‑1 (MQ=255)                                                                                                                                                  gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCAAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg  >  1:131026‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTG  >  NC_002947/5870206‑5870499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.