Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,789,896 | C→G | 12.8% | G1315A (GGA→GCA) | pvdI ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,789,896 | 0 | C | G | 12.8% | 105.8 / 6.9 | 39 | G1315A (GGA→GCA) | pvdI | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base C (17/17); new base G (3/2); total (20/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
GCCGATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGTC > NC_002947/4789748‑4790044 | gCCGATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTc > 3:184585/1‑149 (MQ=255) cGATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCg > 7:275032/1‑149 (MQ=255) aTGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGcc < 4:184585/149‑1 (MQ=255) tGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGccc < 1:192096/149‑1 (MQ=255) ttctCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCt > 7:202599/1‑149 (MQ=255) ctcGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCtt < 8:275032/148‑1 (MQ=255) tcGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTg > 3:23523/1‑149 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCttt < 3:281160/146‑1 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTg < 3:24346/147‑1 (MQ=255) gTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCa < 4:94682/149‑1 (MQ=255) ctgctgcTGGCGCGCTACAGCGGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAg > 5:312467/2‑149 (MQ=255) cgcgcCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTgg > 2:156584/1‑149 (MQ=255) cagcggcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCg < 6:312467/147‑1 (MQ=255) gcagGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCa < 2:258150/149‑1 (MQ=255) tAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCg < 7:3021/126‑1 (MQ=255) tAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCg > 8:3021/1‑126 (MQ=255) cGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatca > 6:43733/1‑149 (MQ=255) tGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGc < 8:205872/122‑1 (MQ=255) tGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGc > 7:205872/1‑122 (MQ=255) tGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatcatc < 1:156584/149‑1 (MQ=255) tGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAatcatc < 5:43733/149‑1 (MQ=255) aCAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTcc > 7:61976/1‑79 (MQ=255) aCAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTcc < 8:61976/79‑1 (MQ=255) cGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGcc > 8:287682/1‑149 (MQ=255) gTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCt > 6:236463/1‑149 (MQ=255) tGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGc < 4:23523/149‑1 (MQ=255) cAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGc > 1:192995/1‑147 (MQ=255) gcagtgcgcTGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAg < 4:18112/144‑1 (MQ=255) tCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTg < 8:202599/149‑1 (MQ=255) ccgccgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTgg > 4:259463/1‑149 (MQ=255) ccgTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCt > 7:89525/1‑149 (MQ=255) cTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCt < 6:179518/147‑1 (MQ=255) cTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCt > 5:179518/1‑147 (MQ=255) ggCGGACGTCTGGACGTGCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGt > 1:122565/1‑149 (MQ=255) gcggACGTCTGGCCGTGCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGtt < 2:224196/149‑1 (MQ=255) gcggACGTCTGGACGTGCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTg < 8:252484/126‑1 (MQ=255) gcggACGTCTGGACGTGCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTg > 7:252484/1‑126 (MQ=255) aCGTCTGGACGTGCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGc > 4:280571/1‑147 (MQ=255) gTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGc > 8:285284/1‑149 (MQ=255) gTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGc > 1:165435/1‑149 (MQ=255) ccAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCGGGCGCTc > 3:40889/1‑136 (MQ=255) ccAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCGGGCGCTc < 4:40889/136‑1 (MQ=255) ccGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGTc > 4:133104/1‑149 (MQ=255) | GCCGATGTTGATCTTCTCGTTGCCGCTGTAGCGCGCCAGCAGCAGGCCGAACGAGGCTAGGAAGACGTGGAACAGCGTGGCGTTGCAGCGCACTGCCAGGCGCCGCAGGTCCGCCGTCAACTGCGCGGGCAGGCGCACGTCCAGACGTCCGCCCCGATAGCTTTGCAGCTCGGGCCGTGGGCGGTCGGCAGGTAACTGCAGCACTGCGAAATCATCTTCCAGGTGCGCCTGCCAGTAGCCGAGCTGGGCTTGCATCTGGCCTTCGCTCAGGCGCTCGCGTTGCCAGCTGGCATAGTC > NC_002947/4789748‑4790044 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |