| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,630 | G→C | 7.5% | intergenic (‑41/‑377) | flhA ← / → PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,630 | 0 | G | C | 7.5% | 208.8 / 6.4 | 67 | intergenic (‑41/‑377) | flhA/PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (30/32); new base C (3/2); total (33/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
TTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACGG > NC_002947/4936490‑4936778 | ttGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGCGCCCCCTGGGCg > 4:167099/1‑149 (MQ=255) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTg > 3:177298/1‑149 (MQ=39) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTGGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGC‑CGCCCA‑GGGGGCGCCTGGGCGt < 5:94553/148‑1 (MQ=255) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTgg > 7:159883/1‑149 (MQ=40) aCATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGCGCCCCCTGGGCGtcaaag < 3:167099/149‑6 (MQ=255) cATCACCAGCAGCAACAGCTGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCATAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCttt < 2:194585/149‑1 (MQ=255) cATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCttt < 3:214950/149‑1 (MQ=255) tCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGc < 7:129193/149‑1 (MQ=255) agcagcAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGAGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCaag > 1:315802/1‑147 (MQ=255) caACAGCGGCACCCCCAGGTTGCCCCTGCCGAGCCCGGCCAGCTTGTTGAGGGCGATGCTGATTAACTGAGTGCGAACCACCGCGAGACCTCTTGATGCAAAACTTTTA‑CGCCCA‑GGCGGCGCCAGGGCCTGGCTTTGCaagatcgca > 8:133806/1‑143 (MQ=14) caACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGc < 7:133806/139‑1 (MQ=255) aaCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTc < 7:95235/149‑1 (MQ=255) aaCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTc < 4:177298/149‑1 (MQ=255) cAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTcc > 2:103524/1‑148 (MQ=255) cGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACCGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAAc < 1:225244/149‑1 (MQ=255) aCCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 2:55487/1‑149 (MQ=255) aCCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg < 2:274766/149‑1 (MQ=255) cccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGc < 7:86390/149‑1 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCa < 5:22073/149‑1 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCa < 8:84982/149‑1 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCAGGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg < 2:57923/146‑1 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCAGGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 1:57923/1‑146 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGa < 6:153230/149‑1 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGTTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 6:151580/1‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 1:311639/1‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGCGCCCCCTGGGCGtc < 6:234792/109‑2 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGCGCCCCCTGGGCGtc > 5:234792/1‑108 (MQ=255) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 3:91392/1‑148 (MQ=255) gCCGGGCTCGGCCGGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaa < 6:167000/149‑1 (MQ=255) gAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 6:178240/149‑1 (MQ=255) ggCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAAcc > 1:47036/1‑149 (MQ=255) gttgCGGGCGTTGTTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGc < 5:151580/148‑1 (MQ=255) cTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAGTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTTCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGAc < 8:29792/149‑1 (MQ=255) cTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGAc < 8:159883/149‑1 (MQ=255) tAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt < 7:82965/148‑1 (MQ=255) tAACTGAGAGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt < 2:315802/148‑1 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt > 7:86087/1‑146 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt < 8:86087/146‑1 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTgg < 2:47036/148‑1 (MQ=255) cTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCt > 5:198696/1‑149 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCt > 6:279018/1‑148 (MQ=255) aGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt > 1:190847/1‑149 (MQ=255) ctacccACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagc < 1:1114/145‑1 (MQ=255) cACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaagc > 3:233925/1‑148 (MQ=255) aCCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt < 5:318003/132‑1 (MQ=255) aCCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGt > 6:318003/1‑132 (MQ=255) ccGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa > 8:52159/1‑148 (MQ=255) gcgAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCa > 7:278935/1‑149 (MQ=255) tCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCAcc > 6:64934/1‑146 (MQ=255) ctctTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGa > 3:118520/1‑148 (MQ=255) tctTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaa > 4:128211/1‑148 (MQ=255) ttGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaaa < 7:48810/147‑1 (MQ=255) gATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaaaaa < 1:103524/147‑1 (MQ=255) tGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 5:64934/148‑1 (MQ=255) gCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga > 5:281704/1‑147 (MQ=255) gCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 6:281704/147‑1 (MQ=255) cAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc > 7:191837/1‑149 (MQ=255) cAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCAACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc > 2:25648/1‑149 (MQ=255) aaaaCTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAATAACGAGAcc > 5:248157/1‑149 (MQ=255) aaaaCTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAcc < 2:190847/149‑1 (MQ=255) aaaCTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGa > 3:289249/1‑137 (MQ=255) aaaCTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGa < 4:289249/137‑1 (MQ=255) aaaCTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCt > 6:191381/1‑149 (MQ=255) cTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGTGAGCACCACCGCGTTGa > 3:58411/1‑103 (MQ=255) cTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGTGAGCACCACCGCGTTGa < 4:58411/103‑1 (MQ=255) tttGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCg > 7:161749/1‑149 (MQ=255) cca‑CGCCCA‑GGCGCCCCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGcc > 7:68941/3‑149 (MQ=255) gcCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt > 7:290666/1‑97 (MQ=255) gcCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt < 8:290666/97‑1 (MQ=255) gcCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACgg < 4:118520/149‑1 (MQ=255) gcCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACgg < 4:233925/149‑1 (MQ=255) | TTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGA‑CGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACGG > NC_002947/4936490‑4936778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |