Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,341,584 | G→T | 11.8% | V231L (GTG→TTG) ‡ | panB → | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,341,584 | 0 | G | T | 11.8% | 143.5 / 10.1 | 51 | V231L (GTG→TTG) ‡ | panB | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
Reads supporting (aligned to +/- strand): ref base G (24/21); new base T (2/4); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.19e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.21e-01 |
TACCCAGCGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTGCGCGCGGCAGT > NC_002947/5341441‑5341731 | tACCCAGCGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTgaag < 7:80382/149‑1 (MQ=255) aGCGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACtt > 8:76507/1‑149 (MQ=255) cGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCTTCACGAACTTcg < 5:313983/149‑2 (MQ=255) cGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCTTCACGAACTTcg < 4:69018/149‑2 (MQ=255) gAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCTTCACGAACTTcgg < 7:238156/149‑3 (MQ=255) tCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGat < 5:893/149‑1 (MQ=255) cACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGata > 2:55869/1‑149 (MQ=255) tGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATa < 7:237206/149‑1 (MQ=255) cGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAgcg > 8:69968/1‑149 (MQ=255) cGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAgcg > 7:146520/1‑149 (MQ=255) aTCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCtcgt < 8:146520/149‑1 (MQ=255) tCCCGGTAATCGGCATTGGCGCCGGCAGCTCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTCAGCGGCCGGGTACCGAAGTTCGTTAACAACTTCATGCACGGCCAACCGGATATCCATAGCGCCCtcgtc > 6:3677/1‑149 (MQ=255) tCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCTTCACGAACtt > 2:299009/1‑112 (MQ=255) tCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCTTCACGAACtt < 1:299009/112‑1 (MQ=255) tCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCtcgtc > 1:69132/1‑149 (MQ=255) ccGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGata > 8:189714/1‑130 (MQ=255) ccGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGata < 7:189714/130‑1 (MQ=255) ggTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGcc > 6:45578/1‑139 (MQ=255) ggTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGcc < 5:45578/139‑1 (MQ=255) gTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTa > 4:94679/1‑149 (MQ=255) ggCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCg > 1:270067/1‑148 (MQ=255) tcggtGGCGCTGCCGGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAg > 5:279856/5‑149 (MQ=255) cATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAgg < 3:115001/149‑1 (MQ=255) ggCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCgg < 7:76507/148‑1 (MQ=255) cGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTcaagc < 1:55869/149‑1 (MQ=255) cgcCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTTGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGt > 8:220432/1‑147 (MQ=255) ccACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGt > 1:264497/1‑149 (MQ=255) ccACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGt > 5:44983/1‑149 (MQ=255) aTGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCa < 2:69132/149‑1 (MQ=255) aTGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCa < 6:279856/149‑1 (MQ=255) ggtactggtactGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGc > 6:64223/1‑148 (MQ=255) gtactgCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAacac < 7:69968/147‑1 (MQ=255) ctgCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGtt < 2:270067/149‑1 (MQ=255) aCATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCa < 3:94679/149‑1 (MQ=255) aTGCTCGGCCTGTCGCTTAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATg < 7:291747/149‑1 (MQ=255) aTGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCAt > 4:17489/1‑148 (MQ=255) cTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGtt > 6:201978/1‑137 (MQ=255) cTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGtt < 5:201978/137‑1 (MQ=255) gCCTGTCGCTGAGCGGCGGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCGAACCGGATATCCATAGCTCCCTCGTCGGTTACGTCGAGGCGGTCAAGCATGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAg < 5:3677/149‑1 (MQ=255) tGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTc > 5:69587/1‑148 (MQ=255) tCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGACCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTcaa < 8:253866/95‑1 (MQ=255) tCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGACCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTcaa > 7:253866/1‑95 (MQ=255) gCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGa < 5:64223/148‑1 (MQ=255) cGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTGCAGTGCATGAATACAGTCAAGACCGTCcg > 5:282792/1‑149 (MQ=255) ggTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACt > 2:211700/1‑149 (MQ=255) tACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGc > 6:14054/1‑73 (MQ=255) tACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGc < 5:14054/73‑1 (MQ=255) ccGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTgcgc > 5:124579/1‑149 (MQ=255) atgAAGTTCTTCACGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTgcgc > 3:196294/3‑149 (MQ=255) tCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTGCGCGCGGCa < 3:17489/148‑1 (MQ=255) cGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTGCGCGCGGCAGt > 4:304053/1‑149 (MQ=255) | TACCCAGCGAACTGGCGGCGGAAATCACCAATGCCGTTGGCATCCCGGTAATCGGCATTGGCGCCGGCAGCGCCACCGATGGCCAGGTACTGGTACTGCACGACATGCTCGGCCTGTCGCTGAGCGGCCGGGTACCGAAGTTCGTGAAGAACTTCATGCAGGGCCAACCGGATATCCATAGCGCCCTCGTCGCTTACGTCGAGGCGGTCAAGCAAGTCAGTTTCCCAGGCAGCGAACACGGGTTCAGTGCATGAATACAGTCAAGACCGTCCGCGAACTGCGCGCGGCAGT > NC_002947/5341441‑5341731 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |