Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,363,064 | A→C | 8.6% | D234E (GAT→GAG) | glmM ← | phosphoglucosamine mutase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,363,064 | 0 | A | C | 8.6% | 173.5 / 7.6 | 58 | D234E (GAT→GAG) | glmM | phosphoglucosamine mutase |
Reads supporting (aligned to +/- strand): ref base A (23/30); new base C (2/3); total (25/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01 |
ACCGACCACCCCGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTGGGCGCAACCTTG > NC_002947/5362923‑5363208 | aCCGACCACCCCGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGATCTCGGCAt > 1:259085/1‑149 (MQ=255) cGACCACCCCGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGATCTCGGCAttg < 2:259085/149‑3 (MQ=255) ccaccCCGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGATCTCGGCAttgcct < 2:270441/149‑6 (MQ=255) ccccGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAcc < 3:258204/149‑1 (MQ=255) ccccGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAc > 2:30870/1‑148 (MQ=255) ccGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAg < 5:46169/149‑1 (MQ=255) gCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTa < 1:30870/149‑1 (MQ=255) cTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAc < 3:95851/142‑1 (MQ=255) cTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAc > 4:95851/1‑142 (MQ=255) cAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCg < 7:4894/148‑1 (MQ=255) cAGATTGCCATGGTCCTTCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGTATCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACATCg < 4:204907/148‑1 (MQ=255) cATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGc > 7:72431/1‑149 (MQ=255) cTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGa < 1:48439/149‑1 (MQ=255) cTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGa > 1:213784/1‑149 (MQ=255) tCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGAt < 3:263616/143‑1 (MQ=255) tCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGAt > 4:263616/1‑143 (MQ=255) gcgAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTc > 8:248180/1‑148 (MQ=255) cgAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGa < 1:66887/149‑1 (MQ=255) atgatgAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGAtgtgt > 6:191702/1‑138 (MQ=255) atgatgAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGAtgtgt < 5:191702/138‑1 (MQ=255) atgaACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAAcc > 2:186842/1‑149 (MQ=255) aaCAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCtt < 8:21704/148‑1 (MQ=255) agcagcTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGAtt > 2:207963/1‑121 (MQ=255) agcagcTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGAtt < 1:207963/121‑1 (MQ=255) cagcTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGa < 7:248180/149‑1 (MQ=255) aCCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAgg < 5:76246/148‑1 (MQ=255) aCCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGc > 7:167488/1‑149 (MQ=255) cGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCg > 2:6169/1‑149 (MQ=255) acgaTGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCgg < 6:128194/149‑1 (MQ=255) cgaTGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAc > 5:226205/1‑79 (MQ=255) cgaTGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGAc < 6:226205/79‑1 (MQ=255) gaTGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGtt > 6:3234/1‑149 (MQ=255) tGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGTCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTgc < 7:200723/149‑1 (MQ=255) tGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGAGGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTgc < 5:294338/149‑1 (MQ=255) cccGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATg < 8:72431/149‑1 (MQ=255) ccGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATg > 1:141477/1‑148 (MQ=255) ggTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGtt < 1:310675/135‑1 (MQ=255) ggTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGtt > 2:310675/1‑135 (MQ=255) aCCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCAc < 1:62830/149‑1 (MQ=255) aTCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTc < 1:186842/149‑1 (MQ=255) gCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCa > 5:78627/1‑149 (MQ=255) gCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCGGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCAc > 1:60365/1‑149 (MQ=255) gCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCa < 5:3234/148‑1 (MQ=255) ccgtcaccgtcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACg < 6:78627/149‑1 (MQ=255) cgtcaccgtcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACg > 5:301667/1‑148 (MQ=255) caccgtcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAAt < 2:141477/149‑1 (MQ=255) accgtcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATa > 2:289566/1‑149 (MQ=255) cgtcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGCAAGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGATCAGGCCGTCCGGTAGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATa > 1:78823/1‑148 (MQ=255) tcaAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCt < 7:152498/149‑1 (MQ=255) aaaGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTg < 8:167488/148‑1 (MQ=255) aaGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTggg > 6:20769/1‑149 (MQ=255) aGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTGGgc < 2:213784/149‑1 (MQ=255) gacaTGCCGATCTCGGCATGTCTGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACg < 5:29033/108‑1 (MQ=255) gacaTGCCGATCTCGGCATGTCTGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACg > 6:29033/4‑111 (MQ=255) tGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGt < 4:74132/109‑1 (MQ=255) tGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGt > 3:74132/1‑109 (MQ=255) gtgcGAGATCGGGATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGTAATACGCTGGGCGCTAcc < 4:71594/146‑1 (MQ=255) cGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTGGGCGCAACCTTg > 1:9712/1‑149 (MQ=255) gagaTCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTGGGCGCAACCTTg > 5:41747/1‑148 (MQ=255) | ACCGACCACCCCGCCTTGCAGCTTGCCATGTTCCTGCAGGTCGCGAGCAATGATGAACAGCAGCTCGTCACCGTCGACGATGGCGCCCGTGTGGTCGACCATCAGCACGCGATCGCCGTCACCGTCAAAGGCAATGCCGAGATCGGCATGTCCGACCAGTACAGCGGCCTGC‑AGCGATTCGATGTGTGTCGAGCCGCAACCTTCGTTGATGTTCAGGCCGTCCGGTTGCGCATGCAGCACGGTCACGTCGGCACCCAGCTCACGGAATACGCTGGGCGCAACCTTG > NC_002947/5362923‑5363208 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |