| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,488,151 | G→A | 92.0% | E494K (GAG→AAG) | PP_4824 → | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,488,151 | 0 | G | A | 92.0% | 215.1 / 7.3 | 75 | E494K (GAG→AAG) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base G (3/3); new base A (35/34); total (38/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
CTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTGGAT > NC_002947/5488007‑5488294 | ctgctgACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCt > 3:277551/1‑149 (MQ=255) ctgACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGa > 3:67559/1‑148 (MQ=255) ctgACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGAt < 7:211835/149‑1 (MQ=255) aCGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCTAGCAACAGAACATCAAGCTGATCa < 7:252465/148‑1 (MQ=255) aCGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAg > 2:74297/1‑141 (MQ=255) aCGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCa < 4:67559/148‑1 (MQ=255) aCGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAAGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAg < 1:74297/141‑1 (MQ=255) gATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCa > 5:18525/1‑149 (MQ=255) gATCAACGAAATTCTGGACATTTCCAAGCTGGAATACCGGCAGATCGAGCTGGATGACGTGCAGTTCGAACTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCa > 5:14192/1‑149 (MQ=255) aTCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTc < 6:250980/147‑1 (MQ=255) aaCGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCAcc > 6:234883/1‑147 (MQ=255) aaCGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCa > 4:297758/1‑149 (MQ=255) aCGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCAccccg > 8:158623/1‑147 (MQ=255) aCGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCACCCAg > 2:202082/1‑149 (MQ=255) cGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGc > 5:58151/1‑131 (MQ=255) cGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGc < 6:58151/131‑1 (MQ=255) gAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGc > 4:274579/1‑148 (MQ=255) aaTTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCcat < 3:274579/149‑2 (MQ=255) ttCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACaa > 8:291753/1‑149 (MQ=255) cATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACcgc < 4:277551/149‑1 (MQ=255) ccAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGt > 6:14649/1‑148 (MQ=255) ccAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGt < 3:297758/148‑1 (MQ=255) cAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGtca > 4:106879/1‑149 (MQ=255) gCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGtcatca < 5:14649/149‑1 (MQ=255) aaTCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGga < 6:52192/149‑1 (MQ=255) ccGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGga > 5:73143/1‑145 (MQ=255) ccGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGga < 6:73143/145‑1 (MQ=255) cGGCAGATCTAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAAAAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGAccc < 6:262289/149‑1 (MQ=255) cGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGAcc < 4:212367/148‑1 (MQ=255) cGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAAAGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGAcc > 3:212367/1‑148 (MQ=255) gCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGgaga > 1:196462/1‑144 (MQ=255) gCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGgaga < 2:196462/144‑1 (MQ=255) tCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCgg < 4:22656/125‑1 (MQ=255) tCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCgg > 3:22656/1‑125 (MQ=255) gATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTgcgc < 2:278414/147‑1 (MQ=255) cGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCgg < 1:309969/123‑1 (MQ=255) cGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCgg > 2:309969/1‑123 (MQ=255) gTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCtt > 2:155790/1‑149 (MQ=255) tGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTg > 6:31892/1‑149 (MQ=255) gCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGt > 4:252567/1‑149 (MQ=255) cAGTTCGAACTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTc < 6:14192/149‑1 (MQ=255) aGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTc > 8:180456/1‑148 (MQ=255) aGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTc < 6:18525/148‑1 (MQ=255) gACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCct > 2:70042/1‑149 (MQ=255) cTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCctgct > 2:136862/1‑149 (MQ=255) aaCGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCctgctg < 1:124711/147‑1 (MQ=255) aCGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGACATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGa > 5:113237/1‑148 (MQ=255) gcgcTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGaaaa < 5:31892/149‑1 (MQ=255) aTCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGccc < 1:155790/148‑1 (MQ=255) aTCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGccc < 5:234883/148‑1 (MQ=255) aTCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGACATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCt < 6:113237/149‑1 (MQ=255) ttGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGTGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAaca < 1:61994/149‑1 (MQ=255) ccagAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGAc > 7:263664/4‑96 (MQ=255) ccTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGAc < 8:263664/96‑1 (MQ=255) ccTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACAcc < 7:94011/148‑1 (MQ=255) cTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑a > 5:244426/1‑149 (MQ=255) tCTTCCGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGc > 5:30238/1‑149 (MQ=255) ccGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCg < 1:136862/146‑1 (MQ=255) ccGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGc < 7:291753/145‑1 (MQ=255) ccGCGCCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGc > 5:251723/1‑145 (MQ=255) gcgcCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAACCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGcc < 3:112704/122‑1 (MQ=255) gcgcCAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAACCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGcc > 4:112704/1‑122 (MQ=255) ccAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCgag < 6:281756/143‑1 (MQ=255) ccAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCgag > 5:281756/1‑143 (MQ=255) ccAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCATGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCgag > 5:276797/1‑143 (MQ=255) cAAGGCCGAGCATCAGAACATCAAGCTGATGAGCTTCACACAGCCAGAAGTACAGCGGGTCATCAGCGGAGAACCTACTCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGTAAAACGCCCTGAAAAACACGG‑ACCAGGGCGAGATCctgc < 6:251723/149‑1 (MQ=255) cAAGGCCGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCctgc > 6:308949/1‑149 (MQ=255) ccGAGCAACAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCtggtg > 1:93889/1‑149 (MQ=255) aCAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGgcgc > 5:27803/1‑149 (MQ=255) cAGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCt < 6:244426/149‑1 (MQ=255) aGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTg > 2:292327/1‑149 (MQ=255) aGAACATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTg < 2:93889/149‑1 (MQ=255) aCATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTGGAt < 7:158623/149‑1 (MQ=255) cATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCGAACCAGGGCGAGATCCTGCTGGTGGTGGCGCTGGAt < 1:202082/149‑1 (MQ=255) cATCAAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTGGAt > 3:169836/1‑148 (MQ=255) | CTGCTGACGCTGATCAACGAAATTCTGGACATTTCCAAGCTGGAATCCCGGCAGATCGAGCTGGATGACGTGCAGTTCGACCTTAACGCGCTGATCGAGGATTGCCTGAACATCTTCCGCGCCAAGGCCGAGCAACAGAACATCGAGCTGATCAGCTTCACCCAGCCACAAGTACCGCGGGTCATCAGCGGAGACCCGACGCGTCTGCGCCAGGCCTTGTCGAGCCTGCTGGAAAACGCCCTGAAAAACACCG‑ACCAGGGCGAGATCCTGCTGGTGGTGGCGCTGGAT > NC_002947/5488007‑5488294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |