Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 516,694 | C→A | 7.0% | E100* (GAA→TAA) ‡ | PP_0429 ← | short‑chain dehydrogenase/reductase family oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 516,694 | 0 | C | A | 7.0% | 172.1 / 4.0 | 57 | E100* (GAA→TAA) ‡ | PP_0429 | short‑chain dehydrogenase/reductase family oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (28/25); new base A (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 |
CATGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGA > NC_002947/516549‑516837 | catGGGCCAGGCTCCACGCGGGCGAGGCCGGCGTCGTTGTGAATCTGCCCTCCACCCTGTACTGCCATCATGTTACTGAT‑GGCATGGGACAGGCGGCTCAGGGCGTGCACGTTGACTTCCAGGAGATGCTGTTCGTCGGCCCATTCATg < 4:287104/149‑1 (MQ=255) catGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCAt < 5:223360/148‑1 (MQ=255) atGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCACCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATgg < 7:97617/149‑1 (MQ=255) ccAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCAAGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATGAATGGGccga < 7:155671/149‑3 (MQ=255) cACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTATTCGTCGGCCCATTCATGGGCCAGGAACGGcc < 2:272977/149‑1 (MQ=255) ccccGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCa > 2:85976/1‑149 (MQ=255) cGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAg < 5:91351/149‑1 (MQ=255) gCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGt < 7:141929/149‑1 (MQ=255) aCGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCcgc < 8:153021/149‑1 (MQ=255) ttGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCa < 2:723/149‑1 (MQ=255) gagaATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAg < 1:85976/148‑1 (MQ=255) gagaATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGt > 1:159312/1‑149 (MQ=255) gaATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGtt > 7:10020/1‑148 (MQ=255) gaATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCACtt > 8:108252/1‑148 (MQ=255) tGCCCGCCACCCTGTACAGCCATCAGGTTACCGATGGGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGt > 1:56969/1‑126 (MQ=255) tGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGt < 2:56969/125‑1 (MQ=255) tGCCCGCCACCCTGTACAGCCAGCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGCCTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCGAGGAACGGCCAATAGGTGCGCAACACCGCGCAGTTgcg > 7:57424/1‑144 (MQ=255) cccGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGc > 8:146794/1‑148 (MQ=255) cccGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCa < 8:10020/149‑1 (MQ=255) ccGCCACCCTGTACAGCCATCAGGATACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCaa < 8:54235/128‑1 (MQ=255) gCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAAt > 6:8726/1‑149 (MQ=255) cccTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGAt < 5:8726/149‑1 (MQ=255) aGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGACCATTCTTGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCt > 7:150286/1‑149 (MQ=255) tCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCct > 5:162673/1‑149 (MQ=255) cAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCctt > 8:81345/1‑149 (MQ=255) ggTTACCGAT‑GGCATGGCACAGGCGGCTGAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCAGAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCcttct > 4:30629/1‑149 (MQ=255) gTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCcttctt < 7:81345/149‑1 (MQ=255) at‑ggcatggcACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGAc < 6:203141/113‑1 (MQ=255) at‑ggcatggcACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGAc > 5:203141/1‑113 (MQ=255) atggcaCAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCa > 4:85073/1‑149 (MQ=255) ggcaCAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCAc > 8:190260/1‑148 (MQ=255) acaGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCAATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCGCTAGCACGAAg > 8:197730/1‑149 (MQ=255) aGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGcc < 7:146794/149‑1 (MQ=255) gcggcTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCt > 2:118008/1‑148 (MQ=255) gcTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGaaa < 6:146674/149‑1 (MQ=255) tCAGGGCCAGCACGTTGACTTCCAGTAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAgg > 3:92950/1‑149 (MQ=255) aGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAgg < 2:159312/147‑1 (MQ=255) ggCCAGCACTTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATTGGCCAGGAACGGCCCATATGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCa < 8:150286/149‑1 (MQ=255) ttGACTTCCAGGAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCggctggct < 4:92950/149‑1 (MQ=255) cagcagATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGc > 3:189287/1‑149 (MQ=255) agcagATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCg > 3:301882/1‑147 (MQ=255) ccTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAg < 4:101754/136‑1 (MQ=255) ccTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAg > 3:101754/1‑136 (MQ=255) cTGTTCATCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCgg > 2:174262/1‑148 (MQ=255) tGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGaa > 6:255036/1‑149 (MQ=255) tGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGaa > 6:110172/1‑149 (MQ=255) tGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGaa > 1:275525/1‑149 (MQ=255) tGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGaa > 1:271044/1‑149 (MQ=255) ttCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACa < 3:85073/149‑1 (MQ=255) gttcctggCCCATGAATGGGCCGGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTc > 3:287958/7‑135 (MQ=255) gttcctggCCCATGAATGGGCCGGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTc < 4:287958/129‑1 (MQ=255) gtcgGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGc < 5:255036/148‑1 (MQ=255) gtcgGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCa > 6:10587/1‑149 (MQ=255) tcgGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCAc < 1:174262/149‑1 (MQ=255) tggCCCATGAATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCAc > 5:33065/2‑148 (MQ=255) ccATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCggctgg > 6:319538/1‑118 (MQ=255) ccATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGa < 7:108252/149‑1 (MQ=255) | CATGGGCCAGGCGCCACCCCGGCCAGGCCGGCGACGTTGAGAATCTGCCCGCCACCCTGTACAGCCATCAGGTTACCGAT‑GGCATGGCACAGGCGGCTCAGGGCCAGCACGTTGACTTCCAGCAGATCCTGTTCGTCGGCCCATTCATGGGCCAGGAACGGCCCATAGGTGCGCAAGCCCGCGCAGTTGACCAGCAAATCGATACGCCGCTCGCCTTCTTCCAGCTCTAGCACGAAGCCTGAAAGGCGCAGCGGCTGGCTGAGGTCGCAGGCGCGGAACAGCACCTCGA > NC_002947/516549‑516837 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |