| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,748,124 | T→A | 5.4% | intergenic (‑151/+35) | PP_5043 ← / ← typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,748,124 | 0 | T | A | 5.4% | 350.0 / 6.2 | 111 | intergenic (‑151/+35) | PP_5043/typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Reads supporting (aligned to +/- strand): ref base T (52/53); new base A (2/4); total (54/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
CAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747978‑5748270 | cAAGCTCCAAAGGAAGAGCCAGCCAACCTAAGCACGTCTTCTGATTGTCACAAGGCTACTAGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCACTGCCTTTc < 5:116932/148‑1 (MQ=255) aaGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑CCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGa > 8:258715/1‑149 (MQ=255) tCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 2:153723/1‑149 (MQ=255) tCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCCCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 2:85937/1‑149 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg > 2:62939/1‑149 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg < 4:169822/149‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg > 2:144668/1‑148 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 1:144668/148‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 1:85512/148‑1 (MQ=255) aaaGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggggg > 6:289999/1‑149 (MQ=255) aaGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGc > 3:48071/1‑149 (MQ=255) cAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGtt < 4:1309/149‑1 (MQ=255) cgagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGttt > 2:231491/2‑148 (MQ=255) gagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg > 7:155668/1‑140 (MQ=255) gagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGtttt > 7:95948/1‑148 (MQ=255) gccagccaACCTAACCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGGCGAACAAGCACCTGCAAA‑ACACAGGCGCATCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcat < 1:294719/149‑1 (MQ=255) ccagccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAACGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcatt > 4:63929/1‑149 (MQ=255) cagccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttttgtgt < 1:84494/149‑6 (MQ=38) cccaCCTAAGCACTGCTTCAGATTCTCACACGGCTCCTCGGATTCCCGTCGAACAAGCACCTGCAAA‑CCACACACGCTTCCTACTGGAGCTATCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGc < 8:263548/146‑1 (MQ=255) ccTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGa < 8:181393/149‑1 (MQ=255) aGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCt < 1:153723/148‑1 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 5:307713/149‑1 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 3:63929/149‑1 (MQ=255) gATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg > 7:274913/1‑149 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAGACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg > 1:70359/1‑149 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttgg < 8:70747/149‑1 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg < 2:236092/148‑1 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAACCTGAGCTAACTCAGttcttg < 1:231491/148‑1 (MQ=255) tCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctt > 6:275762/1‑148 (MQ=255) cacaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACtaa > 4:100829/1‑134 (MQ=255) cacaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 3:100829/136‑1 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct > 5:199105/1‑149 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct < 1:85937/149‑1 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttc < 6:128372/148‑1 (MQ=255) aaGGCTCCTCGGTTTGGCGTCGAACAAGAACCTGCAAA‑AGACAGTCGCGTCCTACTGGAGCTTTCCTCAAGGGACACAATAACGCCCCGGGGCTTTCGTGGGGGGGGGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttg < 1:62939/149‑1 (MQ=255) aGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttgg > 1:10113/1‑149 (MQ=255) ggCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt < 7:216410/110‑1 (MQ=38) ggCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt > 8:216410/1‑110 (MQ=38) tcctcGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTAATTAAGCCTGAGCTAAATCAGTTCTTGGCTTTATTGGCTgc > 6:220680/1‑149 (MQ=255) ctcGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCCGCCTTTCGACCGGGGGCGTTTTAATTCAGCCTCAGCTAACTCACttctag > 8:251618/1‑131 (MQ=255) tcGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttca > 3:217688/1‑106 (MQ=255) tcGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttca < 4:217688/106‑1 (MQ=255) gTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGt < 1:115149/149‑1 (MQ=255) tttGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCTCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTCGCTTTCTAGGCTGCGCGGGTa > 6:102186/1‑149 (MQ=255) gTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCg > 8:281642/1‑149 (MQ=255) aCAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTc > 6:322454/1‑149 (MQ=255) aaGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTAATTGGCTTTCTTGGCTGCGCGGGTACGATCGCCTTCgg > 3:232125/1‑148 (MQ=255) aGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTc < 6:83675/149‑1 (MQ=255) gCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTc > 2:231295/1‑148 (MQ=255) ccTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAgg < 5:220680/149‑1 (MQ=255) tGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGa > 7:281920/1‑148 (MQ=255) cAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtct < 5:289999/149‑1 (MQ=255) aaa‑aCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtctt < 2:10113/149‑1 (MQ=255) aaa‑aCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtctt > 1:2346/1‑149 (MQ=255) aa‑aCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtcttc < 7:281642/149‑1 (MQ=255) a‑aCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtcttct > 1:158490/1‑149 (MQ=255) acacAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATcttctt < 8:285855/149‑1 (MQ=255) acacAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATcttctt < 7:258715/149‑1 (MQ=255) cacaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTg < 6:204071/149‑1 (MQ=255) cacaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTg < 4:59803/149‑1 (MQ=255) acaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTgc > 1:132263/1‑149 (MQ=255) aGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTgcgc < 2:132263/149‑1 (MQ=255) tCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGATTTCATGGCTGCGCGGGTACGCTGGCCTTCGTCCAGGATATTATTgcg > 8:296395/1‑146 (MQ=255) gCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGAc < 6:199105/149‑1 (MQ=255) tCCTAGTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATACAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACg > 7:286682/1‑147 (MQ=255) tCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATACAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACg < 8:286682/147‑1 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg < 6:59414/89‑1 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg > 5:59414/1‑89 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc > 6:63040/1‑149 (MQ=255) tGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGAGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 5:123135/1‑149 (MQ=255) ggAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcatt > 8:261789/1‑60 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 4:288813/1‑147 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 3:97006/1‑147 (MQ=255) aGCTTTCCACAAGGCACACAAACACGCCCACGGCCTTTCGACCGGGGGCGTTTTAATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 7:296395/149‑1 (MQ=255) aGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 8:281920/149‑1 (MQ=255) tttCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCt > 2:296856/1‑109 (MQ=255) tttCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCt < 1:296856/109‑1 (MQ=255) cacaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCAc > 5:74535/1‑149 (MQ=255) acaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACt < 2:70359/149‑1 (MQ=255) gCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGca > 7:183027/1‑149 (MQ=255) acacaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGca > 6:83291/1‑147 (MQ=255) acacaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGca > 2:75672/1‑147 (MQ=255) atgaaaaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGa > 2:246105/4‑134 (MQ=38) atgaaaaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGa < 1:246105/131‑1 (MQ=38) acaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGc < 1:242074/149‑1 (MQ=255) aaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTGATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 6:123135/149‑1 (MQ=255) aaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 3:288813/149‑1 (MQ=255) cGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTcgtcgt > 7:99572/1‑149 (MQ=255) cccccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTcc < 2:2346/149‑1 (MQ=255) agcaggCCTTTCGACGTGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTAGTTGGCTTTCTTGGCTGGGCGGGTTCTGTGTCCTTGGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACTGCTCggcgtc < 8:167517/143‑1 (MQ=255) cccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTTTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTg < 5:275762/149‑1 (MQ=255) cccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTg > 6:320667/1‑149 (MQ=255) cGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCt < 2:45617/146‑1 (MQ=255) cGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGa > 6:34374/1‑149 (MQ=255) ggCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGAt < 5:320667/149‑1 (MQ=255) ccTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGa < 1:118269/149‑1 (MQ=255) ttctCGCCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc < 1:264436/105‑1 (MQ=255) tttCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc > 2:264436/1‑107 (MQ=255) tttCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACGTAGGAGTCCCTTCGCCCAGCTCGTCGTCCTGGTTGatt > 6:36922/1‑147 (MQ=255) tCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAt < 5:63040/147‑1 (MQ=255) | CAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAA‑ACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747978‑5748270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |