| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,748,127 | A→G | 5.4% | intergenic (‑154/+32) | PP_5043 ← / ← typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,748,127 | 0 | A | G | 5.4% | 330.3 / 6.1 | 112 | intergenic (‑154/+32) | PP_5043/typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Reads supporting (aligned to +/- strand): ref base A (52/52); new base G (2/4); total (54/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.47e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
AAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747979‑5748270 | aaGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAACCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGa > 8:258715/1‑149 (MQ=255) tCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 2:153723/1‑149 (MQ=255) tCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCCCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 2:85937/1‑149 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg > 2:62939/1‑149 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg < 4:169822/149‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 1:144668/148‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg > 2:144668/1‑148 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 1:85512/148‑1 (MQ=255) aaaGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggggg > 6:289999/1‑149 (MQ=255) gCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGt > 5:83675/1‑149 (MQ=255) cAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGtt < 4:1309/149‑1 (MQ=255) cgagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGttt > 2:231491/2‑148 (MQ=255) gagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 8:155668/140‑1 (MQ=255) gagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg > 7:155668/1‑140 (MQ=255) gccagccaACCTAACCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGGCGAACAAGCACCTGCAAAACACAGGCGCATCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcat < 1:294719/149‑1 (MQ=255) ccagccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAACGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcatt > 4:63929/1‑149 (MQ=255) cagccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttttgtgt < 1:84494/149‑6 (MQ=38) ccTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGa < 8:181393/149‑1 (MQ=255) aGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCt < 1:153723/148‑1 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 5:307713/149‑1 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 3:63929/149‑1 (MQ=255) gATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg > 7:274913/1‑149 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttgg < 8:70747/149‑1 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg < 2:236092/148‑1 (MQ=255) tCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctt > 6:275762/1‑148 (MQ=255) cacaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACtaa > 4:100829/1‑134 (MQ=255) cacaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 3:100829/136‑1 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct > 5:199105/1‑149 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct < 1:85937/149‑1 (MQ=255) aaGGCTCCTCGGTTTGGCGTCGAACAAGAACCTGCAAAAGACAGTCGCGTCCTACTGGAGCTTTCCTCAAGGGACACAATAACGCCCCGGGGCTTTCGTGGGGGGGGGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttg < 1:62939/149‑1 (MQ=255) aaGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttc > 6:283432/1‑113 (MQ=255) aGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttgg > 1:10113/1‑149 (MQ=255) ggCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt > 8:216410/1‑110 (MQ=38) ggCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt < 7:216410/110‑1 (MQ=38) tcctcGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTAATTAAGCCTGAGCTAAATCAGTTCTTGGCTTTATTGGCTgc > 6:220680/1‑149 (MQ=255) ctcGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCCGCCTTTCGACCGGGGGCGTTTTAATTCAGCCTCAGCTAACTCACttctag > 8:251618/1‑131 (MQ=255) tcGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttca < 4:217688/106‑1 (MQ=255) tcGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttca > 3:217688/1‑106 (MQ=255) gTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGt < 1:115149/149‑1 (MQ=255) tttGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCTCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTCGCTTTCTAGGCTGCGCGGGTa > 6:102186/1‑149 (MQ=255) gTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCg > 8:281642/1‑149 (MQ=255) gAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGcc < 8:274913/148‑1 (MQ=255) aaCAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCtt > 2:242074/1‑149 (MQ=255) aCAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTc > 6:322454/1‑149 (MQ=255) aaGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTAATTGGCTTTCTTGGCTGCGCGGGTACGATCGCCTTCgg > 3:232125/1‑148 (MQ=255) aGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTc < 6:83675/149‑1 (MQ=255) ccTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAgg < 5:220680/149‑1 (MQ=255) tGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGa > 7:281920/1‑148 (MQ=255) gCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtc > 2:118269/1‑149 (MQ=255) cAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtct > 3:59803/1‑149 (MQ=255) aaaaCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtctt > 1:2346/1‑149 (MQ=255) aaaaCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtctt < 2:10113/149‑1 (MQ=255) aaaCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtcttc < 7:281642/149‑1 (MQ=255) aaCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGAtcttct > 1:158490/1‑149 (MQ=255) acacAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATcttctt < 8:285855/149‑1 (MQ=255) acacAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATcttctt < 7:258715/149‑1 (MQ=255) cacaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTg < 4:59803/149‑1 (MQ=255) cacaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTg < 6:204071/149‑1 (MQ=255) acaGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTgc > 1:132263/1‑149 (MQ=255) aGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTgcgc < 2:132263/149‑1 (MQ=255) tCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGATTTCATGGCTGCGCGGGTACGCTGGCCTTCGTCCAGGATATTATTgcg > 8:296395/1‑146 (MQ=255) gCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGAc < 6:199105/149‑1 (MQ=255) tCCTAGTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATACAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACg > 7:286682/1‑147 (MQ=255) tCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATACAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACg < 8:286682/147‑1 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg > 5:59414/1‑89 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttg < 6:59414/89‑1 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc > 6:63040/1‑149 (MQ=255) tGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGAGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 5:123135/1‑149 (MQ=255) ggAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcatt > 8:261789/1‑60 (MQ=255) ggAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcatt < 7:261789/60‑1 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACtt < 1:201020/148‑1 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 4:288813/1‑147 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 3:97006/1‑147 (MQ=255) aGCTTTCCACAAGGCACACAAACACGCCCACGGCCTTTCGACCGGGGGCGTTTTAATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 7:296395/149‑1 (MQ=255) aGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 8:281920/149‑1 (MQ=255) tttCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCt > 2:296856/1‑109 (MQ=255) tttCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCt < 1:296856/109‑1 (MQ=255) cacaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCAc > 5:74535/1‑149 (MQ=255) acaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACt < 2:70359/149‑1 (MQ=255) acacaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGca > 2:75672/1‑147 (MQ=255) acacaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGca > 6:83291/1‑147 (MQ=255) atgaaaaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGa > 2:246105/4‑134 (MQ=38) atgaaaaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGa < 1:246105/131‑1 (MQ=38) acaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGc < 1:242074/149‑1 (MQ=255) aaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 5:287694/149‑1 (MQ=255) aaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTGATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 6:123135/149‑1 (MQ=255) aaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 3:288813/149‑1 (MQ=255) cGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTcgtcgt > 7:99572/1‑149 (MQ=255) cccccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTcc < 2:2346/149‑1 (MQ=255) agcaggCCTTTCGACGTGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTAGTTGGCTTTCTTGGCTGGGCGGGTTCTGTGTCCTTGGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACTGCTCggcgtc < 8:167517/143‑1 (MQ=255) cccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTTTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTg < 5:275762/149‑1 (MQ=255) cccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTg > 6:320667/1‑149 (MQ=255) cGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCt > 1:45617/1‑146 (MQ=255) cGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGa < 6:74535/149‑1 (MQ=255) ggCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGAt < 5:320667/149‑1 (MQ=255) ccTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGa < 1:118269/149‑1 (MQ=255) ttctCGCCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc < 1:264436/105‑1 (MQ=255) tttCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc > 2:264436/1‑107 (MQ=255) tttCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACGTAGGAGTCCCTTCGCCCAGCTCGTCGTCCTGGTTGatt > 6:36922/1‑147 (MQ=255) tCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAt < 5:63040/147‑1 (MQ=255) | AAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747979‑5748270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |