| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,040,794 | T→A | 13.1% | intergenic (+19/+15) | PP_5292 → / ← PP_5293 | catabolite repression control protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,040,794 | 0 | T | A | 13.1% | 151.7 / 13.3 | 61 | intergenic (+19/+15) | PP_5292/PP_5293 | catabolite repression control protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (25/28); new base A (4/4); total (29/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01 | |||||||||||
GTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAACACGAA > NC_002947/6040649‑6040940 | gTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTACCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTg > 2:9922/1‑148 (MQ=255) ttCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCa < 8:30544/149‑1 (MQ=255) cGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGc > 1:51396/1‑149 (MQ=255) gACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGcc < 1:305739/149‑1 (MQ=255) aCCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCaa > 1:220862/1‑149 (MQ=255) ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCATCGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAt < 5:230856/149‑1 (MQ=255) ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCaa < 4:302846/148‑1 (MQ=255) ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAt > 1:185692/1‑149 (MQ=255) tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCaa < 5:171863/140‑1 (MQ=255) tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCaa > 6:171863/1‑140 (MQ=255) tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAt > 6:131252/1‑141 (MQ=255) tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAt < 5:131252/141‑1 (MQ=255) tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAATggccttt > 2:58028/1‑143 (MQ=255) cACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAATggcctttta < 1:58028/149‑8 (MQ=255) aCCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCaa > 2:175373/1‑138 (MQ=255) aCCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCaa < 1:175373/138‑1 (MQ=255) aCCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAATggcctttt < 7:279713/147‑7 (MQ=255) cccGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATc > 5:64152/1‑149 (MQ=255) cccGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATc < 2:285769/149‑1 (MQ=255) cccGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTACCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGTATTGCAGCCCCAATGGTTATTTGATc < 1:9922/149‑1 (MQ=255) ccGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCg > 4:122354/1‑149 (MQ=255) gggCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGgc < 2:211644/149‑1 (MQ=255) ccTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGgccgc < 2:220862/149‑1 (MQ=255) gcgcAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAg < 4:59499/149‑1 (MQ=255) cgcAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAg < 2:51396/148‑1 (MQ=255) cgcAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGc < 6:64152/149‑1 (MQ=255) cAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATATAAAAGGCCATTTGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATAGGGTAGCGa > 2:146016/1‑149 (MQ=255) gCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCTGGCGGCCGatcaaataa > 1:204721/1‑134 (MQ=255) gCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCTGGCGGCCGatcaaataa < 2:204721/139‑6 (MQ=255) ccTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTg > 4:18317/1‑149 (MQ=255) tcCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCAccgccg > 4:28058/1‑149 (MQ=255) cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAgg < 5:311049/120‑1 (MQ=255) cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAgg > 6:311049/1‑120 (MQ=255) cATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgatga < 3:28058/149‑1 (MQ=255) aTGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgatgat < 3:18317/149‑1 (MQ=255) aCCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATc < 2:314413/149‑1 (MQ=255) cTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAata > 4:309478/1‑149 (MQ=255) cTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAat > 2:180679/1‑148 (MQ=255) gACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTg > 1:11728/1‑149 (MQ=255) aCTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGc > 7:73717/1‑149 (MQ=255) cTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGc > 8:273128/1‑148 (MQ=255) tGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCAcc > 7:160431/1‑149 (MQ=255) cTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgat > 1:313080/1‑121 (MQ=255) cTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgat < 2:313080/121‑1 (MQ=255) cTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt < 5:89511/148‑1 (MQ=255) tGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt > 2:60108/1‑147 (MQ=255) aCCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCa < 3:309478/148‑1 (MQ=255) aCCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCa < 1:180679/148‑1 (MQ=255) ccATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCaaa < 7:273128/149‑1 (MQ=255) aaataaccATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATAATCAATGCCAACGTGAGCATGGAAAACAGCAc > 8:13513/7‑149 (MQ=255) aTTGGGGCTGCATTGCAGCCCCATTGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGa > 3:447/1‑149 (MQ=255) aTTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATgg > 7:209548/1‑131 (MQ=255) aTTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATgg < 8:209548/131‑1 (MQ=255) aTTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCg < 4:1043/148‑1 (MQ=255) aTTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCg > 3:1043/1‑148 (MQ=255) aTTGGGGCTGCAATGTAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGa > 7:150489/1‑149 (MQ=255) ttGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGAt < 2:11728/149‑1 (MQ=255) ttGGGGCTGCAATGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgatg < 5:170677/96‑1 (MQ=255) ttGGGGCTGCAATGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCATCATTCGCCCGCACCGCCGCgatg > 6:170677/1‑96 (MQ=255) cATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAACACGa < 3:122354/148‑1 (MQ=255) aTTGCAGCCCCAATTGTTATTTGATCGTCCGCCAGATCATAGGGTAGCTATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAACACGaa < 1:146016/148‑1 (MQ=255) | GTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAACACGAA > NC_002947/6040649‑6040940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |