| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,056,467 | C→G | 8.5% | H198Q (CAC→CAG) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,056,467 | 0 | C | G | 8.5% | 187.1 / 7.2 | 59 | H198Q (CAC→CAG) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| Reads supporting (aligned to +/- strand): ref base C (26/28); new base G (3/2); total (29/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.50e-01 | |||||||||||
ACGAAGCCGACGTGCTGACGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGG > NC_002947/6056325‑6056615 | aCGAAGCCGACGTGCTGACGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCAGTGCTTc > 2:88112/1‑149 (MQ=255) cGAAGCCGACGTGCTGACGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTcc < 6:84672/149‑1 (MQ=255) gACGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTg > 2:281443/1‑148 (MQ=255) aagCTTCCGCTATACGTTGATCCGTTCTGGGCCCTGATGCATGCCGACCTCGCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACATGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTgg < 4:54216/146‑1 (MQ=255) aCGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTg < 5:232967/147‑1 (MQ=255) gCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGt < 1:80375/133‑1 (MQ=255) gCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGt > 2:80375/1‑133 (MQ=255) gCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAG > 8:25985‑M1/1‑149 (MQ=255) gCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAG > 1:68350‑M1/1‑149 (MQ=255) cTACCGCTATACGCTGAACCGCTCTGCGCCCCGACGCCTGCCGACCACCCATGGACGCCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCGGCTTGGTGAGGGCCACTGCTCCCGTGACCAGGTACTGGAAGC < 2:280890‑M1/149‑1 (MQ=255) tACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCC > 1:159244‑M1/1‑149 (MQ=255) ccGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGCCCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTg < 1:281443/149‑1 (MQ=255) taCGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTAc > 3:205808/1‑149 (MQ=255) cGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTAcc < 4:149589/148‑1 (MQ=255) gATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCAGTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCt > 3:287266/1‑149 (MQ=255) tGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTg > 4:93832/1‑148 (MQ=255) aaCCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGaa > 6:250704/1‑148 (MQ=255) aCCGTTCTGCGCCCTGATGCCTGCCGCCCACCCATGGACGGCGAAAAAGAACATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCATGCCCTACCATGAAc > 5:268220/1‑148 (MQ=255) cGTTCTGCGCCCTTATGACTGCCGACAACCCATGGACGGCGAAAAAGACCATAGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTTCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAg < 4:205808/149‑1 (MQ=255) cgcCCTTATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAtgggg < 3:28380/146‑1 (MQ=255) cgcCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTTGTGAGGGCCAGTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAggggg < 1:88112/146‑1 (MQ=255) cgcCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGt < 4:40493/148‑1 (MQ=255) cctgccGACAACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTtcaccccccttgttcagggtagggcaggcttcca < 2:159244‑M1/149‑35 (MQ=255) ctgccGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAgg > 8:3443/1‑149 (MQ=255) ccGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGcac < 7:25985/149‑1 (MQ=255) accCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGc < 4:165072/141‑1 (MQ=255) accCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGc > 3:165072/1‑141 (MQ=255) accCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACg > 3:23678/1‑149 (MQ=255) ccATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACAACGGt > 2:69691/1‑149 (MQ=255) ccATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGC < 3:274408‑M1/101‑1 (MQ=255) ccATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGC > 4:274408‑M1/1‑101 (MQ=255) cATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTc > 3:249405/1‑149 (MQ=255) aTGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGaa > 1:28105/1‑114 (MQ=255) aTGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGaa < 2:28105/114‑1 (MQ=255) tGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGa < 2:68350/149‑1 (MQ=255) ggCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCa < 7:3443/149‑1 (MQ=255) aaaGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCAc < 4:23678/149‑1 (MQ=255) gACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTgg < 4:249405/149‑1 (MQ=255) cATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGaaa > 7:170608/1‑149 (MQ=255) tCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAAcc < 8:170608/149‑1 (MQ=255) acacCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCAGTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATc < 4:287266/149‑1 (MQ=255) ccGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGt < 3:93832/149‑1 (MQ=255) gCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTc < 3:101191/143‑1 (MQ=255) gCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTc > 4:101191/1‑143 (MQ=255) cTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACAtgg < 3:273216/148‑1 (MQ=255) tCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCAGTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACAtggtg > 6:225239/1‑149 (MQ=255) tCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACAtggtg > 6:309704/1‑149 (MQ=255) tCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACAtggt > 3:53416/1‑148 (MQ=255) tCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAATCCAGCTCACTGGAAACCATCCGTCACAtggtg > 5:55041/1‑149 (MQ=255) aaTGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACAtggt < 4:53416/146‑1 (MQ=255) tGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTtcaccccccttgttcagggtagggcaggctt > 8:277669‑M1/1‑62 (MQ=255) tGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTtcaccccccttgttcagggtagggcaggctt < 7:277669‑M1/93‑32 (MQ=255) ttGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCg > 6:195575/1‑139 (MQ=255) ttGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCg < 5:195575/139‑1 (MQ=255) tgctTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATc > 1:106291/1‑148 (MQ=255) gctTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGa > 6:78532/1‑149 (MQ=255) gTGATGGACACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAATGCTCAATGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTg < 5:250704/149‑1 (MQ=255) ggCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCt > 6:142998/1‑149 (MQ=255) aCTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCg < 5:142998/149‑1 (MQ=255) cTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCgg < 5:309704/149‑1 (MQ=255) | ACGAAGCCGACGTGCTGACGCTACCGCTATACGATGAACCGTTCTGCGCCCTGATGCCTGCCGACCACCCATGGACGGCGAAAAAGACCATCGACACCGCCATGCTCAATGACAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGG > NC_002947/6056325‑6056615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |