| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,061,027 | G→A | 5.4% | intergenic (‑108/+41) | PP_5312 ← / ← hupA | hypothetical protein/DNA‑binding protein HU‑alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,061,027 | 0 | G | A | 5.4% | 281.4 / 3.7 | 92 | intergenic (‑108/+41) | PP_5312/hupA | hypothetical protein/DNA‑binding protein HU‑alpha |
| Reads supporting (aligned to +/- strand): ref base G (41/46); new base A (2/3); total (43/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01 | |||||||||||
ATCAACAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCTTGACCGGTTC > NC_002947/6060879‑6061172 | aTCAACAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTg > 5:23333/1‑149 (MQ=255) tCAACAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTgg < 5:230434/149‑1 (MQ=255) aaCAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTgggg > 4:147438/1‑149 (MQ=255) aaCAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTggg < 6:23333/148‑1 (MQ=255) aCAGCCCCATTGCCCAGAGAACAAAGCGTAACTTCATCAACTCGACTCGAATGAAAAGTGACTAATGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGgc < 6:173446/149‑1 (MQ=255) cAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGgcg > 6:31876/1‑149 (MQ=255) ccccATGGCCCAGAGAAGAAACCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGccc < 8:54816/149‑1 (MQ=255) ccATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGGTTGACTTGGGGCGCCCg > 1:109079/1‑149 (MQ=255) ccATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGc > 1:317198/1‑149 (MQ=255) cATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCt > 3:36097/1‑149 (MQ=255) tGGCCCATAGAAGAATGCGGAACTTCATAAACTGGCCTCGAATTAAAAGTGAATAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCTAAACATTTTGCCTGCAGAAAGGACAACGGG‑CGCCCCAAGGCGCCCgttgt < 5:177730/149‑5 (MQ=255) gCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTgg < 2:16457/148‑1 (MQ=255) cccATACAACAAAGCGCAACTTCATCACCGCGCCACTAATCAAACGTTACTACGCCCCGCATTTTATCCTTTACCATAACTATTTATCCAAGTTCTAAACATTTTGCCTGCACAAACCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGcc < 2:295739/149‑1 (MQ=255) cccAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGcc < 2:85549/149‑1 (MQ=255) cccAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTAATGCAAGTTAGAAACATTTTGCCTGCAGAAAGCACAACCGG‑CGCCTTGGGGCGCCCGCTTGGcc > 3:233853/1‑149 (MQ=255) cAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGa > 6:124404/1‑149 (MQ=255) cAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGa > 8:167640/1‑149 (MQ=255) cAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGa < 5:144280/149‑1 (MQ=255) aagaaAGCGGACCTTCATCACCCCGCCTCGAATGAAAAGTGACTACGGCGCGCAGTTTATCCTTTTCCAGAACTATTTTTGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTg < 7:182955/149‑1 (MQ=255) gaaAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTggg > 7:54310/1‑149 (MQ=255) gaaAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTggg < 5:105202/149‑1 (MQ=255) aaaGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCCCAAGGCGCCCgttgt < 6:45626/136‑5 (MQ=255) aaaGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCCCAAGGCGCCCgttgt > 5:45626/1‑132 (MQ=255) aGCGGAACTTCATCACCGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACACCGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGtt > 4:246022/1‑149 (MQ=255) cGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTgggttgt > 4:124273/1‑144 (MQ=255) cGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCATTTTCAAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTg > 2:283696/1‑148 (MQ=255) ggAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGt > 8:150500/1‑148 (MQ=255) ggAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGt > 5:310762/1‑148 (MQ=255) ggAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCCCAAGGCGCCCg > 5:293686/1‑127 (MQ=255) ggAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCCCAAGGCGCCCg < 6:293686/127‑1 (MQ=255) gAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGt > 1:290960/1‑147 (MQ=255) tcatcaACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTgggg > 1:298704/1‑138 (MQ=255) catcaACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCagaga < 6:273806/147‑1 (MQ=255) atcaACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGc > 7:249219/1‑148 (MQ=255) atcaACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGc > 7:240062/1‑148 (MQ=255) atcaACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGc > 2:271574/1‑148 (MQ=255) caACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGAt < 1:271574/149‑1 (MQ=255) cgcgCCGCGAATGAAAAGTGACTAAGCCGCGCAGTTAATCCTTTTCCAGAACTATTTATGCAAGTCCTAAACATTTTGCCGGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCAc < 4:48290/149‑1 (MQ=255) cgcCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCATAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACtt < 1:289693/149‑1 (MQ=255) tCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCt > 5:271334/1‑149 (MQ=255) tCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCt > 7:70177/1‑149 (MQ=255) gAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACT‑GGGTTGTCAGAGAGCGATCACTTGCCTTTc < 3:124273/149‑1 (MQ=255) aTGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCt < 7:150500/149‑1 (MQ=255) tGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCtt < 8:249219/149‑1 (MQ=255) tGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCtt < 8:54310/149‑1 (MQ=255) aaaGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTtggc < 3:147438/149‑1 (MQ=255) aaGTGTCTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTtggct > 6:186359/1‑149 (MQ=255) tGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTtggctggc > 1:167895/1‑149 (MQ=255) cTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTg < 3:141409/149‑1 (MQ=255) tAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTgg > 7:172606/1‑149 (MQ=255) aGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCTAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGc < 5:124404/148‑1 (MQ=255) aGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGc < 6:271334/148‑1 (MQ=255) gcgcgcAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCggg > 4:244947/1‑149 (MQ=255) ctcgctttttATCCTTTTCCAGAAGTATTTATGCATGTTCGAAACATTTTGCCTGCAGAATGCACAACGGG‑GGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCggg < 8:257171/141‑1 (MQ=255) gcAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCggg > 7:257171/1‑145 (MQ=255) cAGTTTATCCTTTTCAAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGt < 1:283696/149‑1 (MQ=255) tttATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGGCAGAGAGCGATCACTTGCCTTTCTtg < 7:253559/127‑1 (MQ=255) tttATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGACAGAGAGCGATCACTTGCCTTTCTtg > 8:253559/1‑127 (MQ=255) tATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAAc < 7:167640/148‑1 (MQ=255) aTCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGc > 6:168042/1‑149 (MQ=255) aTCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGc > 1:169773/1‑149 (MQ=255) tCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCt < 2:169773/149‑1 (MQ=255) ttttCCAGAACTATTTATGCAAGTTCGAAACATTTTGTCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGt > 8:103144/1‑148 (MQ=255) ttttCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTggg < 6:112178/89‑1 (MQ=255) ttttCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTggg > 5:112178/1‑89 (MQ=255) cAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACg > 1:127169/1‑147 (MQ=255) cAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGc < 2:272500/148‑1 (MQ=255) cAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGc > 1:272500/1‑148 (MQ=255) aGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAg > 7:118975/1‑149 (MQ=255) aaCTATTTATGCAAGTTCGAAACATATTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGt > 5:24362/1‑149 (MQ=255) aTTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTg < 6:108713/65‑1 (MQ=255) aTTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTg > 5:108713/1‑65 (MQ=255) tGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAg < 2:127169/149‑1 (MQ=255) cacgTTCGAAACATTTTGCCTGCAGAAACCACACCGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAgg < 5:31876/145‑1 (MQ=255) aaGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCt < 8:240062/149‑1 (MQ=255) gTTCTACACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCACGCTTg < 7:286159/149‑1 (MQ=255) ttCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGAt < 2:200708/82‑1 (MQ=255) ttCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGAt > 1:200708/1‑82 (MQ=255) tCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGa < 2:167895/148‑1 (MQ=255) cGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGaa < 8:70177/148‑1 (MQ=255) cGAAACATATTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGaa < 6:24362/148‑1 (MQ=255) gAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCtt > 4:9351/1‑135 (MQ=255) gAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCtt < 3:9351/135‑1 (MQ=255) gAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAgg > 5:227291/1‑149 (MQ=255) gAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAg < 5:168042/148‑1 (MQ=255) aaaCATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCtt < 2:16741/134‑1 (MQ=255) aaaCATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCtt > 1:16741/1‑134 (MQ=255) tttttGCCGCCATAAAGCACACGGGG‑CGCGTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACg < 2:290960/148‑1 (MQ=255) cTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCATTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGc > 6:307877/1‑149 (MQ=255) aaaGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCt < 3:246022/149‑1 (MQ=255) caACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCt < 5:114073/149‑1 (MQ=255) aCGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCTTg < 7:198387/149‑1 (MQ=255) ggg‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCTTGAc < 2:109079/149‑1 (MQ=255) gcCTTGGGGCGCCCGCTTGGCCGACACTGGTGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCTGGTTCTTGCCAGGATTGAAGGCGACGGTATTGCTGGCCTTg < 5:192843/137‑1 (MQ=255) gcCTTGGGGCGCCCGCTTGGCCGACACTCGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTGGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTAGCCAGGCTTGAAGGCAACTGTATTCCTGGCCTTg > 6:192843/1‑137 (MQ=255) cTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCTTGACCGGTTc < 8:172606/149‑1 (MQ=255) | ATCAACAGCCCCATGGCCCAGAGAAGAAAGCGGAACTTCATCAACGCGCCTCGAATGAAAAGTGACTAAGGCGCGCAGTTTATCCTTTTCCAGAACTATTTATGCAAGTTCGAAACATTTTGCCTGCAGAAAGCACAACGGG‑CGCCTTGGGGCGCCCGCTTGGCCGACACTGGGGTTGTCAGAGAGCGATCACTTGCCTTTCTTGGCTGGCTTGGCGGGGGCGTTAACGCTGTCACGCAGGTTCTTGCCAGGCTTGAAGGCCACGGTATTGCTGGCCTTGATCTTGACCGGTTC > NC_002947/6060879‑6061172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |