Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,062,645 | T→C | 6.5% | E20G (GAA→GGA) | alkT ← | rubredoxin‑NAD(+) reductase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,062,645 | 0 | T | C | 6.5% | 180.1 / 2.2 | 61 | E20G (GAA→GGA) | alkT | rubredoxin‑NAD(+) reductase |
Reads supporting (aligned to +/- strand): ref base T (26/31); new base C (2/2); total (28/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
CCATGGCGCCCGCCTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCAGGCAC > NC_002947/6062502‑6062791 | ccATGGCGCCCGCCTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGACAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACgg < 8:248810/149‑1 (MQ=255) cATGGCGCCCGCCTCGGCCATGAACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCCACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACggg > 7:48528/1‑149 (MQ=255) cgcccgccTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAgg < 2:142443/149‑1 (MQ=255) gcccgccTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGt > 5:218578/1‑149 (MQ=255) cccgccTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGtt < 2:166355/149‑1 (MQ=255) cccgccTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGtt < 2:161293/149‑1 (MQ=255) gcgccTGGGCGATGGACAGGGCGTCGGCGTCCTTCTGCTTGGCAAAGGCCATGGAAAGGTTCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCTACCGCGGCGTCTGCGCATCGAGCTTGCGAATTTCACGGGCCAGGTTg < 8:279658/148‑1 (MQ=255) cTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGc > 2:62491/1‑149 (MQ=255) cGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGccc > 5:126089/1‑149 (MQ=255) acaGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCg < 5:2701/149‑1 (MQ=255) ggCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCTGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTa < 1:21442/149‑1 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCgat < 1:62491/149‑1 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATCCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCga > 8:273768/1‑148 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATCCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCga > 8:269435/1‑148 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATCCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCga < 7:269435/148‑1 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATCCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCga < 7:273768/148‑1 (MQ=255) tCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGGCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCgat < 2:313956/149‑1 (MQ=255) cGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGc > 1:299607/1‑126 (MQ=255) cGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGc < 2:299607/126‑1 (MQ=255) cGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCgatgat > 7:151276/1‑148 (MQ=255) cTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAgggg < 1:137984/149‑1 (MQ=255) ccATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGGTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCg > 4:196133/1‑149 (MQ=255) ccATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTAc < 2:99937/130‑1 (MQ=255) ccATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTAc > 1:99937/1‑130 (MQ=255) aTGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACg > 8:170344/1‑89 (MQ=255) aTGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACg < 7:170344/89‑1 (MQ=255) aTGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTg < 6:126089/149‑1 (MQ=255) aTGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTAACGATGATTACCACAGGGGACGTCATGTCGTg > 4:296508/1‑149 (MQ=255) gAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGt > 5:191248/1‑97 (MQ=255) gAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGt < 6:191248/97‑1 (MQ=255) aaaGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCttt < 8:151276/149‑1 (MQ=255) gCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGAtt > 1:152385/1‑148 (MQ=255) cTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTaa < 3:72398/149‑1 (MQ=255) cTTGGAGGACGATCGACCAGCGGCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTaa < 6:222621/149‑1 (MQ=255) ggAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAAc < 8:48528/147‑1 (MQ=255) ggAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCAAGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAAcc > 5:5036/1‑148 (MQ=255) aGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGAt > 6:23937/1‑149 (MQ=255) gTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATg > 6:111834/1‑149 (MQ=255) tACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATgg < 6:5036/149‑1 (MQ=255) tACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATg > 6:118202/1‑148 (MQ=255) aCCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCAtt < 6:296248/149‑1 (MQ=255) cATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTc < 2:152385/149‑1 (MQ=255) tcgGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGt > 3:107677/1‑149 (MQ=255) cggcggTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCATGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTc < 8:282430/149‑1 (MQ=255) ggTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCtt > 6:152841/1‑149 (MQ=255) tGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCtttt < 5:152841/149‑1 (MQ=255) aTCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTg < 5:118202/148‑1 (MQ=255) aTCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGc < 6:218578/149‑1 (MQ=255) aTCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGc > 8:240918/1‑149 (MQ=255) gCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTc < 5:228303/137‑1 (MQ=255) gCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGAGAATTTCACAGTc > 6:228303/1‑137 (MQ=255) cgTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCg > 8:53294/1‑149 (MQ=255) tGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAGGTCGCTTTTGCCGACACCGCAGTCgggg > 5:284177/1‑148 (MQ=255) cATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAg > 8:10058/1‑149 (MQ=255) aTCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGc > 8:257723/1‑149 (MQ=255) aTCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGAGGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGc > 2:252583/1‑149 (MQ=255) gCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCtt < 7:240918/147‑1 (MQ=255) cGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCa < 7:257723/148‑1 (MQ=255) gAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCAgg > 7:79498/1‑149 (MQ=255) gAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCAg < 7:53294/148‑1 (MQ=255) aTTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCAGGcac < 3:196133/149‑1 (MQ=255) | CCATGGCGCCCGCCTCGGCCATGCACAGGCCGTCGGCGTCCTTCTGCTTGGCAAAGCCCATGGAAAGCATCGGCTTGGAGTACGAACGACCATCGTCGGCGGTGATCAGCAACAGCGGCGTCTGCGCATCGAGCTTGCGAAATTCACGGGCCAGGTTGTAGCCCGCAAGGCCGGTACCGATGATTACCACAGGGGACGTCATGTCGTGCTTTCCTCGATTAACCGATGGAGATCATTTCAAAGTCGCTTTTGCCGACACCGCAGTCGGGGCACAGCCAGTCTTCAGGCAC > NC_002947/6062502‑6062791 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |