Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 660,940 | G→T | 9.4% | intergenic (+72/‑95) | speA → / → PP_0568 | biosynthetic arginine decarboxylase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 660,940 | 0 | G | T | 9.4% | 159.4 / 4.7 | 52 | intergenic (+72/‑95) | speA/PP_0568 | biosynthetic arginine decarboxylase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (21/26); new base T (3/2); total (24/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTCTGAATCCGG > NC_002947/660795‑661087 | cTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAg < 6:7122/149‑1 (MQ=255) cgTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTc < 7:217209/149‑1 (MQ=255) aGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCAc > 1:92369/1‑147 (MQ=255) gCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCTTCGCCCTCatatc < 8:270228/149‑5 (MQ=255) ggACCCACTATCTGGATGCATTGGGCCTGGGCTTGACCCGGTCTTCTTCCCTCTCGTCCTAATTGTCGGGGCCGCTCCTGCAAAAGCCTGTCCTGCCTTTTGTGGGACCGGGCTTGCGTCGCTATATGAGGGCGAACCCCTCACCAGCg < 6:125071/149‑1 (MQ=255) cccAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTca > 4:62028/1‑149 (MQ=255) aGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACaa < 3:146301/149‑1 (MQ=255) tCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCg < 2:119301/148‑1 (MQ=255) tGCCTTGCGCCTTGGGTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAATGCCTGTGCTGCCTTTTGTGGTAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAata < 5:74368/149‑1 (MQ=255) gcgcCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCgg < 2:92369/148‑1 (MQ=255) gcgcCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCg < 6:125337/147‑1 (MQ=255) ccTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCt < 1:254788/149‑1 (MQ=255) cTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTg > 4:133442/1‑149 (MQ=255) ttGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCAt > 1:67846/1‑149 (MQ=255) gACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCAt < 8:7136/147‑1 (MQ=255) aCCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGc < 3:133442/149‑1 (MQ=255) tGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCt > 2:27549/1‑149 (MQ=255) tcgtAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTg > 7:261144/1‑147 (MQ=255) tcgtAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTg < 8:261144/147‑1 (MQ=255) tcgtAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGaa > 6:312793/1‑149 (MQ=255) ttGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAt > 6:146006/1‑149 (MQ=255) gtcgatCCTGCTATTGCCTGTGCTGGCTGTTGTGGGAGCGGCCTTGCGTAGCGATATGTGGGCGAAGGCCTCACCAGCGTCACAAGCGGTAAATATCGGGCCCTGGGCCATCGGACCTTTGCCGGTACCTTTGAATGCATT‑GTTCaaa < 6:318890/143‑1 (MQ=255) gCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAag < 8:125967/149‑1 (MQ=255) gCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAag < 5:146006/149‑1 (MQ=255) ccGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGAAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAagg < 8:119182/149‑1 (MQ=255) gCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCaaa > 5:318890/1‑145 (MQ=255) cTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGAc > 5:49926/1‑148 (MQ=255) aaaaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGatat > 2:86671/1‑149 (MQ=255) ccTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGata < 6:97564/143‑1 (MQ=255) ccTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGata > 5:97564/1‑143 (MQ=255) ctgcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAg < 2:67846/149‑1 (MQ=255) tgcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAgg > 4:48441/1‑149 (MQ=255) gcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCaa < 3:210080/123‑1 (MQ=255) gcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGAAAT‑GTTCaa > 4:210080/1‑123 (MQ=255) cTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTc < 5:312793/149‑1 (MQ=255) ttttGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTcc > 6:119407/1‑149 (MQ=255) gtgGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATc > 4:301169/1‑149 (MQ=255) gggAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGt > 2:252734/1‑149 (MQ=255) ggAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGtt > 4:77898/1‑149 (MQ=255) ggAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGt < 1:276900/148‑1 (MQ=255) gCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCATGGTCCATCGCACAAATGCCGCTACATTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCAAGGATCCCATCGTTTACGTg > 2:234096/1‑149 (MQ=255) gcgATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATATTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGa < 1:86671/148‑1 (MQ=255) gcgATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAgt < 1:27549/149‑1 (MQ=255) tggtGAGGGCTTCGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTc > 3:268047/4‑149 (MQ=255) tggtGAGGGCTTCGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTAACTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTc > 7:194005/4‑149 (MQ=255) ggtGAGGGCTTCGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTCt > 5:19066/3‑149 (MQ=255) gtGAGGGCTTCGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTCt < 6:19066/147‑1 (MQ=255) gggCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGt > 3:69325/1‑108 (MQ=255) gggCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGt < 4:69325/108‑1 (MQ=255) gggCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTc > 6:293878/1‑143 (MQ=255) gggCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTc < 5:293878/143‑1 (MQ=255) cGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTCTGAATCCgg < 5:119407/149‑1 (MQ=255) | CTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAAT‑GTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCCATCGTTTACGTGGCGGTCGAGTGTCTGAATCCGG > NC_002947/660795‑661087 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |