Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 765,351 | T→A | 8.1% | intergenic (‑7/‑55) | PP_0657 ← / → PP_0658 | amino acid ABC transporter substrate‑binding protein/homocysteine S‑methyltransferase family protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 765,351 | 0 | T | A | 8.1% | 173.4 / 4.0 | 61 | intergenic (‑7/‑55) | PP_0657/PP_0658 | amino acid ABC transporter substrate‑binding protein/homocysteine S‑methyltransferase family protein |
Reads supporting (aligned to +/- strand): ref base T (25/31); new base A (2/3); total (27/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGGTAGCTTTCCATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCGAGAGCTGCAGCG > NC_002947/765208‑765497 | gggTAGCTTTCCATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGtt > 8:124805/1‑149 (MQ=255) ggTAGCTTTCCATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTg < 2:250344/149‑1 (MQ=255) tttCCATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCaaa > 4:126438/1‑149 (MQ=255) ccATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGAAATGTTgg > 6:23599/1‑141 (MQ=255) ccATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGAAATGTTgg < 5:19008/141‑1 (MQ=255) ccATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGAAATGTTgg < 5:23599/141‑1 (MQ=255) ccATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGAAATGTTgg > 6:19008/1‑141 (MQ=255) aTCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGt > 5:191636/1‑149 (MQ=255) aaCACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTgg < 3:279433/136‑1 (MQ=255) aaCACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTgg > 4:279433/1‑136 (MQ=255) acGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAgg > 1:181523/1‑149 (MQ=255) acGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAgg < 2:181523/149‑1 (MQ=255) tttCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTaa > 1:47499/1‑147 (MQ=255) tttCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa < 7:5392/149‑1 (MQ=255) tttCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa < 7:150785/149‑1 (MQ=255) tttCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa < 7:136948/149‑1 (MQ=255) tttCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa < 4:248747/149‑1 (MQ=255) tCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAg < 3:299623/148‑1 (MQ=255) cTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGtt < 2:55374/148‑1 (MQ=255) cgcgATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAAc < 4:148960/149‑1 (MQ=255) aTTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCt > 3:274561/1‑148 (MQ=255) aaCCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATcc < 6:191636/149‑1 (MQ=255) cccGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGATGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATccc > 8:167145/1‑148 (MQ=255) gCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAAt < 2:294045/108‑1 (MQ=255) gCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAAt > 1:294045/1‑108 (MQ=255) cTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATaa < 3:129350/149‑1 (MQ=255) cTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGATGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATaa < 7:167145/149‑1 (MQ=255) tCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCTAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATaa > 7:132075/1‑148 (MQ=255) cAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTa > 6:45994/1‑136 (MQ=255) cAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTa < 5:45994/136‑1 (MQ=255) cAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATaa < 8:132075/146‑1 (MQ=255) gTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAAttt > 2:171204/1‑149 (MQ=255) gcgcCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGATAAGAAAATCGCATGTACATACCTGAAATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTa < 3:14106/148‑1 (MQ=255) cAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCAt < 4:274561/149‑1 (MQ=255) cAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCAt > 4:178683/1‑146 (MQ=255) cAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCAt > 8:290532/1‑146 (MQ=255) cAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTAATCAt > 4:75528/1‑146 (MQ=255) cTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCtt < 1:171204/149‑1 (MQ=255) cTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCtt < 6:239014/149‑1 (MQ=255) gggTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCa < 7:276702/148‑1 (MQ=255) gTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAAttt < 5:86262/128‑1 (MQ=255) gTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAAttt > 6:86262/1‑128 (MQ=255) gTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCa > 3:98911/1‑146 (MQ=255) gCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGaa < 4:98911/148‑1 (MQ=255) ttGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCag < 4:225989/140‑1 (MQ=255) gCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTATTCATAAGAACCTTCAGAGAAGTTATATg < 1:17998/146‑1 (MQ=255) gCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATg > 2:17998/1‑146 (MQ=255) aCAAGGCCCGAACCCAGCAGAGAAGAAAATCTCATGTACATAACTGATATGTTGGGCAAATGGGTTATATTGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGc < 3:75528/148‑1 (MQ=255) cAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCg < 7:290532/148‑1 (MQ=255) gCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCaga < 6:171364/125‑1 (MQ=255) gCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCaga > 5:171364/1‑125 (MQ=255) aCCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTaa > 8:235402/1‑149 (MQ=255) agaagaAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTAGTTAATAGTTATAACCCTAATCCCCATATTGTTTTTTACTCATAAGAACGTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAAATCTGGagg > 4:38551/1‑147 (MQ=255) agaaAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGt < 7:124805/148‑1 (MQ=255) tACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCgag < 1:214089/148‑1 (MQ=255) aCATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCgaga < 3:178683/148‑1 (MQ=255) aCCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa > 6:40384/1‑40 (MQ=255) aCCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATa < 5:40384/40‑1 (MQ=255) cTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCGAGAGCTgcag > 1:253516/1‑149 (MQ=255) gATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATACCCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCGAGAGCTgcagcg > 3:30734/1‑149 (MQ=255) gATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATg > 4:62430/1‑111 (MQ=255) | GGGTAGCTTTCCATCAACACGTTGACCATTTCCTTGCGCGATTCAACCCGCTCCAACGTGGCGCCAGCAAAGGCTTGGGTGGCAGTTGCGAGCAGTACAAGGCCCGCACCCAGCAGAGAAGAAAATCGCATGTACATACCTGATATGTTGGGCAAATGGGTGATAGGGTATTTAATAGTTATAACCCTAATCCCCATAATGAATTTTACTCATAAGAACCTTCAGAGAAGTTATATGGCAGAGCGAACGATGGTAATTCTGGACGGTGGCATGGGCCGAGAGCTGCAGCG > NC_002947/765208‑765497 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |