Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 782,045 | T→A | 10.0% | intergenic (‑200/+50) | glyA‑II ← / ← PP_0672 | serine hydroxymethyltransferase/sensory box protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 782,045 | 0 | T | A | 10.0% | 139.5 / 6.1 | 50 | intergenic (‑200/+50) | glyA‑II/PP_0672 | serine hydroxymethyltransferase/sensory box protein |
Reads supporting (aligned to +/- strand): ref base T (22/23); new base A (3/2); total (25/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
GCGGCTGGCATATGAAGTGGCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGCCCTGCAC > NC_002947/781899‑782181 | gcgGCTGGCATATGAAGTGGCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTg > 6:201223/1‑149 (MQ=255) tGAAGTGGCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTcgcg > 4:212001/1‑149 (MQ=255) taGTGGCGTCAAGTGGCAGACAAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGGTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCgg < 2:83254/147‑1 (MQ=255) aGTGGCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGt > 3:305396/1‑149 (MQ=255) gCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAAc < 3:192669/149‑1 (MQ=255) gTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAAccc < 5:90545/149‑1 (MQ=255) tCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTcgcg > 2:5440/1‑139 (MQ=255) tCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCcg > 7:63811/1‑149 (MQ=255) tCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCAAAGCCGgtgccatc < 7:27210/138‑6 (MQ=255) tCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCAAAGCCGgtgccatc > 8:27210/1‑133 (MQ=255) aGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCgcgc > 6:264888/1‑149 (MQ=255) aGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCgcgc > 7:200869/1‑149 (MQ=255) gCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTTTACCcgcgaacac < 1:166661/149‑6 (MQ=255) cAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACg < 5:201223/149‑1 (MQ=255) gggCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCtt < 8:63811/148‑1 (MQ=255) ggCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGTTAAACCCGCGCCTACGGGGGCCTtgt < 1:168346/149‑1 (MQ=255) ttCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTtgtgtg > 6:324995/1‑149 (MQ=255) tCATCTTGAATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGc > 8:185889/1‑149 (MQ=255) aTCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCgg < 3:72399/149‑1 (MQ=255) aTCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCgg < 6:288460/149‑1 (MQ=255) ttGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGt > 8:140829/1‑148 (MQ=255) cATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGGTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCaa < 3:212001/148‑1 (MQ=255) ccGCGCCGTTTCTGGGCGGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGaa < 6:172056/149‑1 (MQ=255) cgcCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACAt < 7:185889/149‑1 (MQ=255) ggcgggggcgggAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGtt < 8:200869/148‑1 (MQ=255) cgggggcgggAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTg < 4:257424/147‑1 (MQ=255) cgggggcgggAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTg > 3:257424/1‑147 (MQ=255) ttGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAAGATGAACAAGGTCTCGTTGGAGAATTGCGCCTc > 1:135427/1‑149 (MQ=255) gACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCg > 7:257949/1‑148 (MQ=255) gACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAAACCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCg > 7:285500/1‑148 (MQ=255) aCCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGaa < 8:257949/149‑1 (MQ=255) aCCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGaa > 3:13653/1‑149 (MQ=255) ccTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAAc < 4:13653/149‑1 (MQ=255) cTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACt > 5:232843/1‑149 (MQ=255) cGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTg > 2:97378/1‑149 (MQ=255) gCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgc > 5:302580/1‑149 (MQ=255) gCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgc > 3:289891/1‑149 (MQ=255) aGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGTGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGccc < 4:289891/149‑1 (MQ=255) aGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgc > 7:123596/1‑147 (MQ=255) aGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgc < 8:123596/147‑1 (MQ=255) ggcgCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACgg < 5:317437/56‑1 (MQ=255) ggcgCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACgg > 6:317437/1‑56 (MQ=255) cgcgGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAg < 5:324995/149‑1 (MQ=255) cgGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATCGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGcc < 7:140829/149‑1 (MQ=255) gcgaacACCGGCAAAGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgcc > 6:54111/6‑131 (MQ=39) gcgaacACCGGCAAAGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGgccgcc < 5:54111/126‑1 (MQ=39) gATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGCCCTGc < 1:97378/148‑1 (MQ=255) gaacACCGGCAAAGCCGGTGTTCGCGGGTAAACCCGCGGCAACCGGGGCCTTGTTGGGGGGTGAATGGAACATGAACAAGGGCGGGTTGGAGAATTTCGGCGCGGACAGATGCGGTGGCATAGGCCGCCCGAACAGATAGCACTGccc > 2:262151/4‑146 (MQ=255) gCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGccc < 2:107611/135‑1 (MQ=255) gCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGccc > 1:107611/1‑135 (MQ=255) | GCGGCTGGCATATGAAGTGGCGTCAAGTCGCAGACCAATGGGCTTCATCTTGCATCCCGCGCCGTTTCTGGGCTGGGCGGGGGCGGGAGTTGACCTGGAAGTCCGCTTTTTTATGCAGGAATGCGGCGCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCGCCTACGGGGGCCTTGTGTGCGGGTCAATGGAACATGAACAAGGTCTCGTTGGAGAATTGCGCCTCGAACTGATGCGCTGGCATCGGCCGCCCGAACAGATAGCCCTGCAC > NC_002947/781899‑782181 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |