Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 983,584 | A→T | 7.0% | intergenic (+42/‑47) | iscX → / → ndk | cysteine desulfurase activity regulator/nucleoside diphosphate kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 983,584 | 0 | A | T | 7.0% | 167.0 / 3.2 | 57 | intergenic (+42/‑47) | iscX/ndk | cysteine desulfurase activity regulator/nucleoside diphosphate kinase |
Reads supporting (aligned to +/- strand): ref base A (29/24); new base T (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.65e-01 |
GTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCC > NC_002947/983447‑983724 | gTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGtt < 1:155382/149‑1 (MQ=255) gCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGAATTATACGCggg < 3:191279/136‑1 (MQ=255) gCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGAATTATACGCggg > 4:191279/1‑136 (MQ=255) ccAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGt > 8:211896/1‑148 (MQ=255) cAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTaa > 6:6006/1‑149 (MQ=255) agTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAacac < 2:113303/149‑1 (MQ=255) ttCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGAATTATACGCggg < 6:257325/129‑1 (MQ=255) ttCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGAATTATACGCggg > 5:257325/1‑129 (MQ=255) tCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCa > 5:34399/1‑149 (MQ=255) cgacgaTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATAtt < 3:116277/149‑1 (MQ=255) cgacgaTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATAtt > 7:266400/1‑149 (MQ=255) aTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGa < 5:6006/149‑1 (MQ=255) aTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGa < 4:54036/149‑1 (MQ=255) tCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAAt > 8:258102/1‑124 (MQ=255) aCGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTc < 6:34399/148‑1 (MQ=255) aCGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCAGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTc > 3:252960/1‑148 (MQ=255) cgcgGCGGTGAGAACCTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGCAGCCGACTAAGCGTCACTTGCAGGTTAGCCAATCCCCCGGACCCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACCCTCATATTCTGGAGTTTTCCa < 4:252960/149‑1 (MQ=255) gcggcgGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTgg < 4:32965/139‑1 (MQ=255) gcggcgGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTgg > 3:32965/1‑139 (MQ=255) gcggcgGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCAt < 3:229084/149‑1 (MQ=255) ggcggTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATgg > 4:199349/1‑149 (MQ=255) ggTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCa < 4:145845/143‑1 (MQ=255) ggTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCa > 3:145845/1‑143 (MQ=255) agaAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTTCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCa < 8:266155/149‑1 (MQ=255) aaaGTGCTCGAGGAAATCCAGGACGCCTGGATCGACGAAGCCGAATAAGCGTCACTTGCAGGTTAGGCAATCCCGCGGAACCCGATTATAATTCGAGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGCTCAAc > 2:200347/1‑149 (MQ=255) gTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTc > 6:235287/1‑132 (MQ=255) gTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTc < 5:235287/132‑1 (MQ=255) tGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTAc < 2:297213/149‑1 (MQ=255) tGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTAc > 5:127052/1‑149 (MQ=255) cGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGa < 5:123343/121‑1 (MQ=255) cGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGa > 6:123343/1‑121 (MQ=255) aaTCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCcat > 7:124193/1‑148 (MQ=255) aaTCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCcat > 7:119952/1‑148 (MQ=255) ccTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCcatc > 3:23792/1‑138 (MQ=255) ccTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCcatc < 4:23792/138‑1 (MQ=255) gacgaAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGtt < 8:266400/148‑1 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc < 7:211896/149‑1 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc > 7:73294/1‑149 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc < 4:73151/149‑1 (MQ=255) aGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCGATCATCAAGCCTGACGCTGTTGCCaa > 5:115647/1‑148 (MQ=255) gACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACg > 3:58000/1‑149 (MQ=255) aGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGcc < 4:151717/124‑1 (MQ=255) aGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGcc > 3:151717/1‑124 (MQ=255) gCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCg > 8:247804/1‑149 (MQ=255) gCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCg > 8:295094/1‑149 (MQ=255) gCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCg > 7:150069/1‑149 (MQ=255) ttGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTATTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGa > 1:68478/1‑148 (MQ=255) gCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATca > 6:181897/1‑149 (MQ=255) gCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCACCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATca > 4:110915/1‑149 (MQ=255) cccGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCgaag > 8:157259/1‑148 (MQ=255) ccGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCgaagaa < 7:295094/149‑1 (MQ=255) aaCCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCg < 8:73294/149‑1 (MQ=255) aCCCGCGTATAATTCGCGTGTTTAATTTTTCTTAACACTCATTTTCTGGAGTTATCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCgg < 6:115647/149‑1 (MQ=255) cccGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGc < 5:181897/149‑1 (MQ=255) ccGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCAGCACTCGCTTCGAAGAAGCCGGcc > 7:120167/1‑149 (MQ=255) gcgTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATc > 8:115175/1‑122 (MQ=255) gcgTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATc < 7:115175/122‑1 (MQ=255) | GTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTAGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCC > NC_002947/983447‑983724 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |