Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,086,210 | A→G | 6.8% | D394G (GAT→GGT) | tldD → | microcin B17 maturation protease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,086,210 | 0 | A | G | 6.8% | 172.4 / 3.0 | 59 | D394G (GAT→GGT) | tldD | microcin B17 maturation protease |
Reads supporting (aligned to +/- strand): ref base A (24/31); new base G (2/2); total (26/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
CGGCCGCCGTGAATCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGTAACGACCT > NC_002947/1086067‑1086354 | cGGCCGCCGTGAATCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTTGATATCa < 3:125908/149‑1 (MQ=255) cGGCCGCCGTGAATCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTTGATATCa < 3:121237/149‑1 (MQ=255) aaTCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGTAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGGGGTGGACAGGTGGATATCACCAG‑CGGCaa < 5:301324/148‑1 (MQ=255) aaTCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCaa < 6:176953/148‑1 (MQ=255) tACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCgt > 2:2921/1‑149 (MQ=255) gcgcACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGtt < 8:10129/149‑1 (MQ=255) cTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTccac > 6:120038/1‑149 (MQ=255) gCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGt > 5:240263/1‑134 (MQ=255) gCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGt < 6:240263/134‑1 (MQ=255) ccGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAg > 1:308714/1‑149 (MQ=255) cGATGCCACGGATGACCAACACCTACATGCGAGCCGGCGATAGCGACGGTCAGGAGATCATAGCGTAGGTGAAGAAGGGTATCTACTGCGCAAAGCTCGGTTGTGGACAGGTGGATATCACCAT‑CGGCAAGTTCGTGTTCTCCACCAGt < 4:39941/149‑1 (MQ=255) aTGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTtctc < 7:187715/140‑1 (MQ=255) aTGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTtctc > 8:187715/1‑140 (MQ=255) aTGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGt > 3:41501/1‑147 (MQ=255) tGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAGCCGGCAAGTTCGTGTTCTCCACCAGTGa < 1:2921/149‑1 (MQ=255) aCGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGcc > 6:53101/1‑148 (MQ=255) cAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATc > 8:240052/1‑148 (MQ=255) cAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATc > 6:30724/1‑148 (MQ=255) ccTACATGCGAGCCTGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTTGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGAc < 5:248253/149‑1 (MQ=255) ccTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGAc < 3:70886/149‑1 (MQ=255) cTACATGCGAGCCGGCGAAAGCGACCCACAGGAGAGCATCGCGTCTGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACg < 4:18244/149‑1 (MQ=255) tagaTGCGAGCCGGCGAAAGCGACCGACAGGAGATCATCGCGGCGGTGAAGAAGGGTATCTACTGCGCCAAGCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAg < 4:70746/126‑1 (MQ=255) aaCATGCGAGCCGGCGAAAGCGACCCACAGGATATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACAAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAg > 3:70746/2‑129 (MQ=255) aCATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑c < 6:232938/101‑1 (MQ=255) aCATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑c > 5:232938/1‑101 (MQ=255) cATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACgg < 5:36375/147‑1 (MQ=255) gCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGat < 3:273801/84‑1 (MQ=255) gCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGat > 4:273801/1‑84 (MQ=255) aaGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCa < 2:308714/148‑1 (MQ=255) aGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGTTGGACATGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCTAAGACGGCAAGATTACcgcg < 1:254642/144‑1 (MQ=255) aGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTAGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTAAcgct > 2:254642/1‑143 (MQ=255) gACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGaa < 4:41501/149‑1 (MQ=255) aCCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAg < 5:30724/149‑1 (MQ=255) cccACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAgg < 4:271556/149‑1 (MQ=255) cacaGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGgc > 3:186748/1‑149 (MQ=255) aGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTCCCGCGCCAGTGAAGGgcgc > 6:1860/1‑148 (MQ=255) gagaTCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGc > 8:16701/1‑120 (MQ=255) gagaTCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGc < 7:16701/120‑1 (MQ=255) agaTCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAAcc < 5:53101/149‑1 (MQ=255) tcatcGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCt > 6:267037/1‑148 (MQ=255) atcGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGAt > 5:265327/1‑149 (MQ=255) tcGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATc < 7:240052/149‑1 (MQ=255) tGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGt < 6:265327/149‑1 (MQ=255) ggTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGc < 5:120038/149‑1 (MQ=255) aTCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGAt > 1:168660/1‑149 (MQ=255) aCTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGc > 1:74973/1‑149 (MQ=255) cgcCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCgg < 5:267037/148‑1 (MQ=255) cgcCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCg < 2:168660/147‑1 (MQ=255) ccAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGtt < 2:74973/149‑1 (MQ=255) cAAGCTCTGTGGTGGACAGGTGGATATCACCAG‑CTGCAAGTTCGTGTTCTCCACCAGTGAGCCCTACCTGATCTAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGttt < 4:186748/149‑1 (MQ=255) cAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGttt > 2:67244/1‑149 (MQ=255) ccTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGa > 5:259957/1‑149 (MQ=255) cTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGAt > 6:267345/1‑149 (MQ=255) gtggACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGt < 1:67244/149‑1 (MQ=255) gACAGGTGGATATCACCAG‑CGGCAAGGTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGTaa < 7:239384/148‑1 (MQ=255) gTGGGTATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGc < 3:131600/102‑1 (MQ=255) gTGGGTATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGc > 6:110837/1‑102 (MQ=255) gTGGGTATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGc > 4:131600/1‑102 (MQ=255) gTGGGTATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGc < 5:110837/102‑1 (MQ=255) gTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGTAACGACCt > 2:160867/1‑149 (MQ=255) gTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGTAACGACCt > 7:238231/1‑149 (MQ=255) | CGGCCGCCGTGAATCCTACGCGCACCTGCCGATGCCACGCATGACCAACACCTACATGCGAGCCGGCGAAAGCGACCCACAGGAGATCATCGCGTCGGTGAAGAAGGGTATCTACTGCGCCAACCTCGGTGGTGGACAGGTGGATATCACCAG‑CGGCAAGTTCGTGTTCTCCACCAGTGAGGCCTACCTGATCGAAGACGGCAAGATTACCGCGCCAGTGAAGGGCGCAACCCTGATCGGCAATGGTCCCGAGGCGATGAGCCGGGTTTCGATGGTCGGTAACGACCT > NC_002947/1086067‑1086354 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |