Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,184,152 | A→T | 7.0% | V78E (GTA→GAA) | mltF ← | membrane‑bound lytic murein transglycosylase F |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,184,152 | 0 | A | T | 7.0% | 173.9 / 2.9 | 57 | V78E (GTA→GAA) | mltF | membrane‑bound lytic murein transglycosylase F |
Reads supporting (aligned to +/- strand): ref base A (27/26); new base T (2/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
ACCTCCAGATAGGGATGGGAGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAGGGTGCTGG > NC_002947/1184005‑1184293 | aCCTCCAGATAGGGATGGGAGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTAc > 6:262401/1‑149 (MQ=255) ccAGATAGGGATGGGAGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTAGGCGGTCTCGATCTGCAGCTTTACGcc > 8:267640/1‑148 (MQ=255) tAGGTATGGGAGTATCTCACCTGGTTGTTGCGCCGCTCACTGCTGACCAGGCGGGCTGCAGCCAGTACCGGTCCGGAGGGCTTTCCGAGTGCGTCTTACAGCTCGTCCTGGTTGTCGGCGGTCTCTATCTGCAGCTTTACGCCGA‑GAtc < 6:169066/149‑1 (MQ=255) gAGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGa > 8:84580/1‑148 (MQ=255) aGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGaaa > 8:31601/1‑149 (MQ=255) tcACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGGTg > 2:301737/1‑148 (MQ=255) tcACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCATTTCGCCGACGATC‑TCGGCGTAAAGCTgc > 4:47320/1‑148 (MQ=255) aCCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTg < 7:84580/146‑1 (MQ=255) aCCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCATTTCGCCGACGATC‑TCGGCGTAAAGCTgcag < 3:47320/149‑4 (MQ=38) aCCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCATTTCGCCGACGATC‑TCGGCGTAAAGCTgc < 2:55713/147‑2 (MQ=255) cTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGTCAGCCAGTACCGGGACGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGATTTACGCCGA‑GATCGTCGGCGAAATGCTGGAc > 2:203900/1‑147 (MQ=255) cTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGaaa < 4:134000/139‑1 (MQ=255) cTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGaaa > 3:134000/1‑139 (MQ=255) cTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGAc > 1:110513/1‑147 (MQ=255) ggTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGGTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGtt < 8:257024/149‑1 (MQ=255) aCTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACTGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑gg > 1:89708/1‑149 (MQ=255) aCTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTg < 6:90200/126‑1 (MQ=255) aCTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTg > 5:90200/1‑126 (MQ=255) aCTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑g < 7:31601/148‑1 (MQ=255) tgctgACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTg > 3:305543/1‑124 (MQ=255) tgctgACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTg < 4:305543/124‑1 (MQ=255) aCCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGcc > 3:252493/1‑149 (MQ=255) aCCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGc < 5:286258/148‑1 (MQ=255) gcAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTg < 8:161746/149‑1 (MQ=255) aGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCAGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTgg < 8:150811/148‑1 (MQ=255) aGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCAGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTgg > 7:150811/1‑148 (MQ=255) gCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGaa < 7:28952/149‑1 (MQ=255) tACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCg > 4:188666/1‑127 (MQ=255) tACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCg < 3:188666/127‑1 (MQ=255) ggAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGc < 5:262401/149‑1 (MQ=255) cTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGc < 2:110513/149‑1 (MQ=255) ttGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCg > 3:138760/1‑149 (MQ=255) ccGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCgtgt < 4:252493/149‑1 (MQ=255) ccGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCgtgt < 1:203900/149‑1 (MQ=255) gAGGGCGTCGTACTGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGa < 2:89708/149‑1 (MQ=255) gggCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATc < 8:40531/149‑1 (MQ=255) cgtACAGTTCGTCTAGGTTGTAGGCTGTCTCGATCTGCAGCTTTAGGCCTA‑GATCGTCGGCGAAATGCTTTTCCTGTTCGTACTCAAAGCC‑TTTTTCGCCGTTACGTTCCTGTAACTATGTTGCCGGGCTGTTGCGTGTGATCActcg < 4:174973/148‑1 (MQ=255) gTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCAt > 3:237291/1‑149 (MQ=255) ggTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCAtcctcc > 8:206642/1‑149 (MQ=255) gTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATcctcct > 3:98096/1‑149 (MQ=255) gTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCa > 1:235437/1‑139 (MQ=255) gTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCa < 2:235437/139‑1 (MQ=255) gcggTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTc < 8:215009/74‑1 (MQ=255) gcggTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTc > 7:215009/1‑74 (MQ=255) gTCTCGATCTTCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGATCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTgg < 1:145745/87‑1 (MQ=255) gTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGATCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTgg > 2:145745/1‑87 (MQ=255) tctcGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTc > 2:79899/1‑148 (MQ=255) ctcGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTc > 3:105770/1‑147 (MQ=255) tcGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAg > 7:10271/1‑149 (MQ=255) gATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCTTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAgg < 7:267640/148‑1 (MQ=255) gATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAggg > 4:263508/1‑149 (MQ=255) gATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAggg > 4:259130/1‑149 (MQ=255) gATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAgg < 7:206642/148‑1 (MQ=255) cAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAggg < 8:10271/143‑1 (MQ=255) cAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAggg < 4:98096/143‑1 (MQ=255) cAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAGGGTGCTgg > 3:157399/1‑149 (MQ=255) aGCATTTCGCCGACGATC‑TCGGCGTAAAGCTGGACCAGTTCGTACTCAAAGCCTAGTTTCGCCGTTACGGTCATGGAAGTAGGTTGCCGGCCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAGGGTGCTgg > 1:241875/1‑149 (MQ=255) | ACCTCCAGATAGGGATGGGAGTATCTCACCTGGGTTTTGCGCCGCTCACTGCTGACCAGGCCGGCGGCAGCCAGTACCGGGCCGGAGGGCTTGCCGAGGGCGTCGTACAGCTCGTCCAGGTTGTCGGCGGTCTCGATCTGCAGCTTTACGCCGA‑GATCGTCGGCGAAATGCTGGACCAGTTCGTACTCAAAGCC‑GGTTTCGCCGTTACGGTCCTGGAAGTAGGTTGCCGGGCTGTTGCGTGTGATCACGCGCAGCACGCCATCCTCCTTCACGCGCTCGAGGGTGCTGG > NC_002947/1184005‑1184293 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |