Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,226,710 T→A 7.7% intergenic (‑220/‑111) gltI ← / → PP_1072 glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,226,7100TA 7.7% 186.4 / 4.3 64intergenic (‑220/‑111)gltI/PP_1072glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (28/31);  new base A (3/2);  total (31/33)
Fisher's exact test for biased strand distribution p-value = 6.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCATTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCATCGA  >  NC_002947/1226567‑1226855
                                                                                                                                               |                                                                                                                                                 
tGCATTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGaa                                                                                                                                              <  7:251942/149‑1 (MQ=255)
  cATTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACg                                                                                                                                            >  3:170305/1‑149 (MQ=255)
   aTTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACTGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGATAACCGAACga                                                                                                                                           <  1:271583/149‑2 (MQ=255)
   aTTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGc                                                                                                                                           <  7:86302/149‑1 (MQ=255)
    ttCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCa                                                                                                                                          >  8:251867/1‑149 (MQ=255)
     tCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCAt                                                                                                                                         >  6:6586/1‑149 (MQ=255)
        gCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATggg                                                                                                                                      >  5:134406/1‑149 (MQ=255)
                gtgtAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAAc                                                                                                                              <  1:270315/149‑1 (MQ=255)
                    agagCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTAt                                                                                                                          >  4:286118/1‑149 (MQ=255)
                    agagCATGACTCGTGCCAAGCCCTGCAGTCGACCTAAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGCGCTTCGCCAGGCCGAATAAACAGCGATTCCTCCTACGGTTATCCGAACGCATGGGCTGCCACCCTAt                                                                                                                          >  2:318282/1‑149 (MQ=255)
                        cATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATcc                                                                                                                                                 >  4:115988/1‑122 (MQ=255)
                        cATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATcc                                                                                                                                                 <  3:115988/122‑1 (MQ=255)
                        cATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCg                                                                                                                      <  5:6586/149‑1 (MQ=255)
                         aTGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCgg                                                                                                                     <  7:251867/149‑1 (MQ=255)
                             cTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGc                                                                                                                                  >  1:37004/1‑132 (MQ=255)
                             cTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGc                                                                                                                                  <  2:37004/132‑1 (MQ=255)
                             cTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGc                                                                                                                                  >  7:85733/1‑131 (MQ=255)
                             cTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGc                                                                                                                                  <  8:85733/131‑1 (MQ=255)
                              tCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCg                                                                                                                >  6:280964/1‑149 (MQ=255)
                              tCGTGCCAACCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATc                                                                                                                                                  <  4:7121/114‑1 (MQ=255)
                              tCGTGCCAACCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATc                                                                                                                                                  >  3:7121/1‑114 (MQ=255)
                                         ccTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAAc                                                                                                     >  4:81835/1‑149 (MQ=255)
                                                                 gTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCt                                                                               >  1:31266/1‑147 (MQ=255)
                                                                   aTTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGa                                                                           >  7:41999/1‑149 (MQ=255)
                                                                   aTTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGa                                                                           >  3:42993/1‑149 (MQ=255)
                                                                          gTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTg                                                                    <  3:81835/149‑1 (MQ=255)
                                                                                    gTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGctc                                                          >  5:285021/1‑149 (MQ=255)
                                                                                         gACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCATTGCGCGGCAAGGGCTCAGACTTAGTGAGCTTTGCTCttt                                                       <  8:41999/147‑1 (MQ=255)
                                                                                         gACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCttt                                                       <  4:42993/147‑1 (MQ=255)
                                                                                           ccTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCt                                                   <  1:261626/149‑1 (MQ=255)
                                                                                            ctctctGCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAAGTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTg                                                  <  1:318282/149‑1 (MQ=255)
                                                                                            ctctctCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTg                                                  <  3:286118/149‑1 (MQ=255)
                                                                                             tctctcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTg                                                  >  4:122492/1‑148 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGc                                                                                                >  1:218880/1‑98 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGc                                                                                                <  2:218880/98‑1 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTg                                                  <  5:210401/144‑1 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTg                                                  >  6:210401/1‑144 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGga                                                <  5:280964/146‑1 (MQ=255)
                                                                                                 tcCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGagag                                             >  8:95821/1‑149 (MQ=255)
                                                                                                    ggggTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGACTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTc                                          <  4:20346/149‑1 (MQ=255)
                                                                                                       gTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCcac                                       <  6:285021/149‑1 (MQ=255)
                                                                                                           gCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGAt                                   <  6:134406/149‑1 (MQ=255)
                                                                                                           gCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGAt                                   >  5:17051/1‑149 (MQ=255)
                                                                                                                  cGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTcaccg                            >  1:123004/1‑149 (MQ=255)
                                                                                                                      tAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTcaccgcacc                        >  6:309826/1‑149 (MQ=255)
                                                                                                                                ttGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGaa              <  2:31266/149‑1 (MQ=255)
                                                                                                                                ttGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGCGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGa               >  6:179725/1‑148 (MQ=255)
                                                                                                                                ttGCTAGTTCGGTTATCCGAACGCATTGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGATCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGaa              <  4:170305/149‑1 (MQ=255)
                                                                                                                                ccatgcGTTCGGATAACCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGaa              >  3:20975/6‑149 (MQ=255)
                                                                                                                                   tgcGTTCGGATAACCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTcaccgcac                         <  7:179736/133‑1 (MQ=255)
                                                                                                                                   tgcGTTCGGATAACCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTcaccgcac                         >  8:179736/3‑135 (MQ=255)
                                                                                                                                   cTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCacgaacga           >  4:199082/1‑149 (MQ=255)
                                                                                                                                    tCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCttt                                                       <  6:37502/104‑1 (MQ=255)
                                                                                                                                    tCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCttt                                                       >  5:37502/1‑104 (MQ=255)
                                                                                                                                    tCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGAt          >  4:262831/1‑149 (MQ=255)
                                                                                                                                      gTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGAtt         <  5:309826/148‑1 (MQ=255)
                                                                                                                                      gTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGAtt         <  6:17051/148‑1 (MQ=255)
                                                                                                                                      gTTCGGATAACCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGCCGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCCCCGCACCGGCTCCCGAACGATTc        >  6:223609/1‑149 (MQ=255)
                                                                                                                                         cGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCa      <  3:122492/148‑1 (MQ=255)
                                                                                                                                          ggTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGt                                 >  2:4409/1‑120 (MQ=255)
                                                                                                                                          ggTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGt                                 <  1:4409/120‑1 (MQ=255)
                                                                                                                                          ggTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCATc    <  6:226869/149‑1 (MQ=255)
                                                                                                                                          ggTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCATc    <  3:262831/149‑1 (MQ=255)
                                                                                                                                            ttATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGTGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCATCGa  <  5:179725/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                 
TGCATTCGGCTACCAAGTGTAGAGCATGACTCGTGCCAAGCCCTGCTGTCGACCTTAAACCACTGGTATTGCTCGTGCTTGACAGTCTCGACCTCTCTCCGGGGTTCGCCAGGCCGAATAAACAGCGATTGCTCGTTCGGTTATCCGAACGCATGGGCTGCCAACCTATCCCGGTATCGCTTGCGGTAACTATGCAGTGCGCGGCAAGGGCTCAGACGTAGTGAGCTTTGCTCTTTGCCTGGAGAGTTCCACAGATGTCACCGCACCGGCTCCCGAACGATTCCATCGA  >  NC_002947/1226567‑1226855

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: