Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,392,244 | A→G | 8.2% | D54G (GAC→GGC) | PP_1214 → | transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,392,244 | 0 | A | G | 8.2% | 170.4 / 4.2 | 61 | D54G (GAC→GGC) | PP_1214 | transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (28/27); new base G (3/2); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGAAGCCAT > NC_002947/1392098‑1392388 | cAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGAc < 6:58776/148‑1 (MQ=255) aaGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGAc > 1:301138/1‑147 (MQ=255) gCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGTATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGtt > 1:1047/1‑149 (MQ=255) gCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGtt < 4:78360/149‑1 (MQ=255) gAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTTGTCCAGGGCCAGGCgaaga < 3:234687/149‑5 (MQ=255) gAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTgg < 1:32978/149‑1 (MQ=255) cAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGcc > 5:230426/1‑148 (MQ=255) aaGCAGCGCAATGTGCGGCAGGATGCAAAGAGAGGTAATGTCTTCACCAAGTTGATCCGTGAACTGACGGTCGCTGCCAATCAGGGTGGCCCTGATCCGGCATCCAACCCGCGTCTTCGCCTTGCCCTGGACAAGGCGTTGTGCGCCaa < 8:92978/149‑1 (MQ=255) aaGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCaa < 8:104272/149‑1 (MQ=255) aaGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCaa > 7:104272/1‑149 (MQ=255) cACCGCAAAGAGCGCGAGGATGCCAAGAGAGGCTAGGTCTTCACCTATTGGATCGGTGAAATGACGGTCTCTGCGAAGCAGGGTGGCCCTGATCCGGCATCCAACCCGCGTCTTCGCCTGTACGTGTACAAGGCGTTGGGCGCCAACAt < 4:39281/149‑1 (MQ=255) cAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGcc > 6:8063/1‑149 (MQ=255) aaaGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCcg > 5:216947/1‑149 (MQ=255) gcgcCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGAca < 2:236535/149‑1 (MQ=255) gcgcCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGAc < 2:301138/148‑1 (MQ=255) cgcCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTTGTCCAGGGCCAGGCgaag > 2:248066/1‑123 (MQ=255) cgcCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTTGTCCAGGGCCAGGCgaag < 1:248066/126‑4 (MQ=255) tGCCAAGAGCGGCAAGGTCTTCACCAACTCGATCCGTGAACTCACGGGCGCTGCCAAGCAGGGGGGCCCGGATCCGGCATCCAACCCGCGGCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCatcgatc < 2:239528/149‑1 (MQ=255) tGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGa < 5:245367/131‑1 (MQ=255) tGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGa > 6:245367/1‑131 (MQ=255) tGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCatcgatc < 6:65541/149‑1 (MQ=255) cAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATcgcg > 5:277402/1‑149 (MQ=255) aaGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCgcgc > 7:116384/1‑149 (MQ=255) ggCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGc > 7:186729/1‑149 (MQ=255) cAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGccc > 8:211763/1‑149 (MQ=255) cAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGccc > 1:98947/1‑149 (MQ=255) aaGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCg > 5:107301/1‑149 (MQ=255) cAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCa > 1:46615/1‑149 (MQ=255) cAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCa > 4:229710/1‑149 (MQ=255) gTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCAcc > 7:257046/1‑148 (MQ=255) gTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCAcc > 8:35600/1‑148 (MQ=255) tGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGTATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCaa < 2:1047/149‑1 (MQ=255) gATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAAt < 7:35600/148‑1 (MQ=255) gATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAAt > 1:44349/1‑148 (MQ=255) tCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCCAGCACCacgggc < 6:277402/149‑6 (MQ=255) tGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGc > 2:169649/1‑148 (MQ=255) aCGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAAt < 2:46615/147‑1 (MQ=255) aCGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGt < 5:8063/149‑1 (MQ=255) tCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCg > 3:191889/1‑147 (MQ=255) tCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGaa < 6:107301/149‑1 (MQ=255) tGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAAt < 2:38119/127‑1 (MQ=255) tGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAAt > 1:38119/1‑127 (MQ=255) tGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAgagc > 1:80346/1‑149 (MQ=255) cAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCaa > 4:77003/1‑72 (MQ=255) cAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCaa < 3:77003/72‑1 (MQ=255) cAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAgagct > 4:250200/1‑147 (MQ=255) aGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTAc > 2:36243/1‑149 (MQ=255) gggTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGGCAAGGCGTTGGGCGCCAACATGAGCCGCGACATGATCGATCGCGCCGTGGCCCGTGGTGCTGGCACTAATGAAAGCGACAATGTCGAAGAGCTGAGCTAc > 1:229543/1‑148 (MQ=255) gCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAgg < 2:98947/148‑1 (MQ=255) cGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATCTCGAAGAGCTGAGCTACGAAGGTTAt < 1:169649/149‑1 (MQ=255) ggATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATg < 3:229710/149‑1 (MQ=255) cAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAgagctgagct > 6:128015/1‑125 (MQ=255) aCCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGgtggcgtg < 8:186729/149‑1 (MQ=255) cccGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACTTGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGgtggcgtgg < 6:216947/149‑1 (MQ=255) gcccaacGCCTTGTCCAGGGCCAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGAt > 5:46814/7‑149 (MQ=255) cGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATgg < 2:20740/148‑1 (MQ=255) gCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTc > 2:202333/1‑149 (MQ=255) ggCCCTGGACAAGGCGTTGGGCGACAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGCCAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGAAg > 6:225325/1‑149 (MQ=255) gCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGaa < 8:116384/147‑1 (MQ=255) ccTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGAAGCCa < 3:250200/149‑1 (MQ=255) cTGGCCAAGGGGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGAAGCCAt < 6:46814/149‑1 (MQ=255) | CAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCTGCCAAGCAGGGTGGCCCGGATCCGGCATCCAACCCGCGTCTTCGCCTGGCCCTGGACAAGGCGTTGGGCGCCAACATGAGCCGCGACATCATCGATCGCGCCGTGGCCCGTGGTGCTGGCACCAATGAAAGCGACAATGTCGAAGAGCTGAGCTACGAAGGTTATGGCCCGGGTGGCGTGGCGATCATGGTCGAAGCCAT > NC_002947/1392098‑1392388 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |