| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,483,878 | C→G | 11.5% | intergenic (+23/‑45) | yhdW → / → yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,483,878 | 0 | C | G | 11.5% | 120.7 / 6.0 | 43 | intergenic (+23/‑45) | yhdW/yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (16/22); new base G (2/3); total (18/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.15e-01 | |||||||||||
GTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGC > NC_002947/1483737‑1484021 | gTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCccgccgc < 5:11291/149‑1 (MQ=255)gTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCccgccgc < 5:281932/149‑1 (MQ=255) aCTATGGCGAAGTGTTCGAGAACAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGGATGccgccgcagg < 3:12153/149‑4 (MQ=255) tGGCGAAGGGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCGGGATGCCGCCGCAgg < 2:71936/148‑1 (MQ=255) gaagaaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGTA‑TGGCTGCACCCTGCGGCGGCGGGATGCCGCCGCAg < 1:210689/133‑1 (MQ=255) gaagaaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCGGGATGCCGCCGCAg > 2:210689/1‑132 (MQ=255) aagaaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTA‑ATTAGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTAc > 1:260085/1‑149 (MQ=255) agaaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACt < 6:107863/148‑1 (MQ=255) aaCCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTc > 3:271197/1‑149 (MQ=255) ccTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGAGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGGTT‑A‑TGGCTGCACCCTGCGTCGGCTTCCCGCCTCCGCAGGCTGTTCGAATCCCTACTGTCCg < 1:216800/149‑1 (MQ=255) ggCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCgggg < 6:39672/148‑1 (MQ=255) ggCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCggg < 4:271197/147‑1 (MQ=255) gCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACt > 7:54518/1‑139 (MQ=255) gCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACt < 8:54518/139‑1 (MQ=255) ccAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAg < 3:221/120‑1 (MQ=255) ccAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAg > 4:221/1‑120 (MQ=255) gagCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACtt > 4:215635/1‑148 (MQ=255) aaGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAaaatcaa < 4:260112/148‑1 (MQ=255) ggCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCAccc > 7:216379/1‑148 (MQ=255) cATGAACGCCCTGTGGAACAACGGCGGCTTCCAGTACGGGCCTCCAGTGCGCTG‑A‑TGGCTGCACGCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCatg < 7:120189/149‑3 (MQ=255) cATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAg < 7:120188/149‑1 (MQ=255) cATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAg > 5:321067/1‑149 (MQ=255) aTGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGgc < 8:180960/139‑1 (MQ=255) aTGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGgc > 7:180960/1‑139 (MQ=255) aaCGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGc < 4:135196/148‑1 (MQ=255) gCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTg > 4:219694/1‑148 (MQ=255) cccTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTc < 3:215635/149‑1 (MQ=255) tgtgGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATGCCGCCGCCGGAGGGTGTTGGAATGCGTACTGGCCGGGGCACGGCAGGCAAAAGCAAATCGGCGCACCCCAGGGCTGGGcccg > 6:34649/1‑148 (MQ=255) tgtgGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATcc > 3:104031/1‑92 (MQ=255) tgtgGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATcc < 4:104031/92‑1 (MQ=255) gAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTaa < 3:219694/148‑1 (MQ=255) gtcggcATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCcgc < 6:76189/147‑1 (MQ=255) aGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTgcgcgc < 2:188454/149‑1 (MQ=255) tACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGt > 1:189322/1‑149 (MQ=255) cgcgCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTgg < 8:9429/149‑1 (MQ=255) gcgcCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGc > 1:268865/1‑149 (MQ=255) cTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGtt < 6:321067/149‑1 (MQ=255) cgcTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATc < 8:216379/148‑1 (MQ=255) gCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTaa < 6:101181/103‑1 (MQ=255) gCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTaa > 5:101181/1‑103 (MQ=255) tGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTg > 3:221438/1‑149 (MQ=255) cggcggCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGTCTTGTCCCGTAACGATCCGAGTGTGCGCGCGTGGCTGTTACAGATCCTCACGATCGTCTTCGTGGt > 8:292015/1‑149 (MQ=255) ggcATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGc > 1:278526/1‑149 (MQ=255) | GTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTG‑A‑TGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCACTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGC > NC_002947/1483737‑1484021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |