| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,601,266 | G→T | 14.3% | intergenic (‑83/‑104) | bglX ← / → PP_1404 | beta‑D‑glucoside glucohydrolase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,601,266 | 0 | G | T | 14.3% | 72.9 / 4.8 | 28 | intergenic (‑83/‑104) | bglX/PP_1404 | beta‑D‑glucoside glucohydrolase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (12/12); new base T (2/2); total (14/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
GGGCGGCGAGGGCCGCCTGACTGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTG > NC_002947/1601120‑1601406 | gggCGGCGAGGGCCGCCTGACTGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCa < 8:30696/149‑1 (MQ=255) gccgccTGACTGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAAttcttc < 4:156441/149‑1 (MQ=255) aCTGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAgcggcg < 1:55050/149‑1 (MQ=255) tGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAgg < 1:295546/130‑1 (MQ=255) tGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAgg > 2:295546/1‑130 (MQ=255) cAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTCCCGTATCAACGGTGATACGAGCGCGACCGAACTTTACAGGCGGCTATTGGTGTACGATTTGCAGGCAATTGTACCAGCGGCGGATTa > 4:206296/1‑149 (MQ=255) aGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTc < 8:292597/149‑1 (MQ=255) cccAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTTGcc > 7:62395/1‑149 (MQ=255) atcaATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGc > 4:51335/1‑149 (MQ=255) atcaATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGc > 3:71583/1‑149 (MQ=255) gTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaa > 3:201563/1‑148 (MQ=255) ttttGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaac > 6:75052/1‑148 (MQ=255) ttGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaacaa < 4:71583/148‑1 (MQ=255) gggCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACta < 3:51335/148‑1 (MQ=255) gCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGc > 8:213338/1‑149 (MQ=255) cGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAAc > 5:258765/1‑145 (MQ=255) cGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAAc < 6:258765/145‑1 (MQ=255) tATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCaa < 4:154615/149‑1 (MQ=255) gACAGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGAccccc > 7:202397/1‑149 (MQ=255) ccGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCtt < 4:201563/149‑1 (MQ=255) gAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTcg < 7:213338/149‑1 (MQ=255) aGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTcgac < 5:75052/149‑1 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca < 7:123662/101‑1 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca > 8:119437/1‑101 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca > 8:123662/1‑101 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca < 7:119437/101‑1 (MQ=255) gcTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAg > 3:24935/1‑149 (MQ=255) tACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTg > 4:269301/1‑149 (MQ=255) | GGGCGGCGAGGGCCGCCTGACTGGCAAGGCCCATGGCCAGGCCCAGCAAAGACAGTTTCATCATCAATTCCGTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTG > NC_002947/1601120‑1601406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |