| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,601,331 | C→T | 12.9% | intergenic (‑148/‑39) | bglX ← / → PP_1404 | beta‑D‑glucoside glucohydrolase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,601,331 | 0 | C | T | 12.9% | 73.8 / 3.3 | 31 | intergenic (‑148/‑39) | bglX/PP_1404 | beta‑D‑glucoside glucohydrolase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (13/14); new base T (2/2); total (15/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.16e-01 | |||||||||||
GTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTGCTTGCCCGTCGTGCCGACGA > NC_002947/1601191‑1601479 | gTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaa > 3:201563/1‑148 (MQ=255) ttttGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaac > 6:75052/1‑148 (MQ=255) ttGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATaacaa < 4:71583/148‑1 (MQ=255) gggCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACta < 3:51335/148‑1 (MQ=255) gCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGc > 8:213338/1‑149 (MQ=255) cGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAAc < 6:258765/145‑1 (MQ=255) cGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAAc > 5:258765/1‑145 (MQ=255) tATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCaa < 4:154615/149‑1 (MQ=255) gACAGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGAccccc > 7:202397/1‑149 (MQ=255) ccGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCtt < 4:201563/149‑1 (MQ=255) gAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTcg < 7:213338/149‑1 (MQ=255) aGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTcgac < 5:75052/149‑1 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca > 8:119437/1‑101 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca < 7:123662/101‑1 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca < 7:119437/101‑1 (MQ=255) ttCAGGCGGCTATTGTTGTACGATTTTCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCTGGGATaaca > 8:123662/1‑101 (MQ=255) gcTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAg > 3:24935/1‑149 (MQ=255) tACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTg > 4:269301/1‑149 (MQ=255) tcttcCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGt > 3:153738/1‑149 (MQ=255) cAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCg > 4:72529/1‑148 (MQ=255) cAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCg > 8:148869/1‑148 (MQ=255) gCCTGTATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATg > 5:277681/1‑149 (MQ=255) ccTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGTGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGc < 8:202397/149‑1 (MQ=255) cTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGc < 2:108726/124‑1 (MQ=255) tatGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACt < 3:269301/149‑1 (MQ=255) gCCTGCGGATGAAGCCCCGAATGCCGTGATAACAACTATAAGAAAGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCTTTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGa < 3:206296/148‑1 (MQ=255) cGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGt < 7:148869/147‑1 (MQ=255) gAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTGCTTGcc > 2:306326/1‑149 (MQ=255) ccGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTg > 2:236677/1‑137 (MQ=255) ccGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTg < 1:236677/137‑1 (MQ=255) aaTGCCGGGATAAGAACTATAAGAACGCTCAAGAGACCGACGGCATGACCACCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACGGATGCCGAACTGGTGACGGTGCTTGCCCGTCGTGcc < 8:62395/149‑1 (MQ=255) cGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGGCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTGCTTGCCCGTCGTGCcgacga > 1:52655/1‑149 (MQ=255) | GTTTTGGGGCCTCTGCCGTATCCACGGTGATACGTGCGCGACCGAAGTTTTCAGGCGGCTATTGTTGTACGATTTGCAGGCAATTCTTCCAGCGGCGGATTATGCCTGAATATGTCGCCTGCGGATGAAGCCCCGAATGCCGGGATAACAACTATAAGAACGCTCAAGAGACCGACGGCATGACCCCCTTCGACGAATACCATCAGCGGCAGATTGCCGAAGCCATTGCCCGTGCCGAACGGCATACCGATGCCGAACTGGTGACGGTGCTTGCCCGTCGTGCCGACGA > NC_002947/1601191‑1601479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |