| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 253,348 | T→C | 17.2% | intergenic (‑133/+38) | PP_0202 ← / ← PP_0203 | CBS domain‑containing protein/dipeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 253,348 | 0 | T | C | 17.2% | 128.8 / 19.0 | 58 | intergenic (‑133/+38) | PP_0202/PP_0203 | CBS domain‑containing protein/dipeptidase |
| Reads supporting (aligned to +/- strand): ref base T (20/28); new base C (5/5); total (25/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.31e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
GACGGTCTTCATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACTCGTTGTCGTTGTGCCCGGTG > NC_002947/253204‑253491 | gACGGTCTTCATACGGGCCCCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTcg > 3:39744/1‑149 (MQ=255) aCGGTCTTCATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTcgc < 1:236221/149‑1 (MQ=255) cTTCATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCt > 2:148905/1‑148 (MQ=255) cATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTaaaa > 6:242243/1‑149 (MQ=255) cATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTa < 8:86719/146‑1 (MQ=255) cGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACcgc < 4:10121/149‑1 (MQ=255) cGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACcgc < 2:176754/149‑1 (MQ=255) ctctGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGa > 1:220789/1‑146 (MQ=255) ctctGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGa < 2:220789/146‑1 (MQ=255) tGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGTCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGc < 8:175090/149‑1 (MQ=255) cGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAgg < 5:242243/146‑1 (MQ=255) cGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTCTTCGCGGTTTTAGCCGCGAAAAGGcc < 6:292571/148‑1 (MQ=255) gggTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCgg > 6:185588/1‑149 (MQ=255) aCTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCaa < 2:26775/149‑1 (MQ=255) cTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCaaa < 5:185588/149‑1 (MQ=255) ggAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCg < 4:274444/148‑1 (MQ=255) cTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAaga < 6:308571/115‑1 (MQ=255) cTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAaga > 5:308571/1‑115 (MQ=255) cTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGc < 1:148905/149‑1 (MQ=255) cTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGc > 5:207966/1‑149 (MQ=255) tAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTACCGGCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGCTAc < 6:282157/123‑1 (MQ=37) tAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTACCGGCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGCTAc > 5:282157/1‑123 (MQ=37) aaaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGccc > 8:50255/1‑149 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAagag > 7:288281/1‑113 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAagag < 8:288281/113‑1 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAg < 3:218053/133‑1 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAg > 4:218053/1‑133 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGccc < 4:39744/148‑1 (MQ=255) aaGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGcc < 1:243566/147‑1 (MQ=255) aGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCg > 3:261391/1‑148 (MQ=255) ggTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCAt < 5:60504/120‑1 (MQ=255) ggTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCAt > 6:60504/1‑120 (MQ=255) cgcTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCAtt < 7:50255/149‑1 (MQ=255) gCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCcgc < 1:27846/134‑1 (MQ=255) gCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCcgc > 2:27846/1‑134 (MQ=255) ggCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTcacca > 4:116152/1‑149 (MQ=255) aaTGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCt > 4:37708/1‑149 (MQ=255) aTGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTg > 6:194541/1‑149 (MQ=255) tGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGc < 6:7729/149‑1 (MQ=255) cAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCaa < 4:261391/149‑1 (MQ=255) gCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCAt < 6:207966/149‑1 (MQ=255) cATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTCTTCGCGGTTTTAGCCGCGaaaa < 3:262708/70‑3 (MQ=21) cATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTCTTCGCGGTTTTAGCCGCGaaaa > 4:262708/1‑68 (MQ=21) gCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCt < 3:116152/149‑1 (MQ=255) aaaaaCGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATGCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACgg > 4:43039/1‑148 (MQ=255) aaaaaCGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTc < 4:46821/143‑1 (MQ=255) aaaaaCGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACAGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTc > 3:46821/1‑143 (MQ=255) aaCGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt < 3:37708/149‑1 (MQ=255) aaCGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt < 4:9190/149‑1 (MQ=255) gCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACtcgtt > 1:242262/1‑149 (MQ=255) cTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACtcgttg < 5:194541/149‑1 (MQ=255) ttGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt > 7:103095/1‑131 (MQ=255) ttGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt < 8:103095/131‑1 (MQ=255) cGGCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt < 6:144901/125‑1 (MQ=38) cGGCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCtt > 5:144901/1‑125 (MQ=38) ggCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACTCGTTGTCGTTGTGc > 6:147294/1‑143 (MQ=39) ggCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACTCGTTGTCGTTGTGc < 5:147294/143‑1 (MQ=39) gCCTCTTCGCGGTTTTAGCCGCGAAAAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACTCGTTGTCGTTGTGCCCGgtg > 4:45895/1‑148 (MQ=255) ttttCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACtcgttgtcgtt > 8:240050/1‑135 (MQ=255) ttttCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACtcgttgtcgtt < 7:240050/135‑1 (MQ=255) | GACGGTCTTCATACGGGCCTCTGCGGGTGAAAAAAGCACTGTCTCGGAGTAACTAAAGCATCCGGTACGGCGCTCTGCACGGCAATGCAGGAAACGGCATGGAGGCGATTGAAAAACGTCATGGCTGTTCGCTTGTAGCGGCCTTTTCGCGGCTAAAACCGCGAAGAGGCCGGTACTGCGCATCAAAGCTTCGGCATCTGCCCGATCCGCGCCACCATTTCGCTCACCACCTGCAAGTCCAGCATGAACTGCTCCACGGTCTTGAACTCGTTGTCGTTGTGCCCGGTG > NC_002947/253204‑253491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |